NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14789.1 Public Homo sapiens Y CDY2A 24 110 108 CCDS HistoryNCBI Gene:9426Re-query CCDS DB by CCDS ID:14789.1Re-query CCDS DB by GeneID:9426See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14789.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000250838.6 ENSP00000250838.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000250838.6Link to Ensembl Protein Viewer:ENSP00000250838.4Re-query CCDS DB by Nucleotide ID:ENST00000250838Re-query CCDS DB by Protein ID:ENSP00000250838
Original member Current member NCBI NM_004825.2 NP_004816.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004825.2Link to Protein Sequence:NP_004816.1Re-query CCDS DB by Nucleotide ID:NM_004825Re-query CCDS DB by Protein ID:NP_004816Link to BLAST:NP_004816.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004816.1 541 Q9Y6F7 541 100% 0 0

Chromosomal Locations for CCDS 14789.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 18026115 18027740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGCTTCCCAGGAGTTTGAGGTTGAAGCTATTGTTGACAAAAGACAGGATAAAAATGGGAATACACAGT
AT
TTGGTTCGGTGGAAAGGTTATGACAAACAGGATGACACTTGGGAACCAGAGCAGCACCTCATGAACTG
T
GAAAAATGTGTACATGATTTTAATAGACGACAGACTGAAAAACAGAAAAAACTGACATGGACTACAACC
AGT
AGAATTTTTTCAAACAATGCCAGAAGAAGAACTTCCAGATCTACAAAAGCAAACTATTCTAAGAACT
CT
CCTAAAACTCCAGTGACTGATAAACACCACAGGTCCAAAAACTGCAAGTTATTTGCTGCCAGCAAGAA
C
GTTAGGAGAAAGGCAGCTTCAACTCTCTCCGACACAAAGAATATGGAGATAATAAATTCAACTATTGAG
ACC
CTTGCACCTGACAGCCCCTTTGACCACAAGAAAACTGTGAGTGGCTTTCAGAAACTTGAGAAACTGG
AC
CCTATTGCAGCAGATCAGCAGGACACGGTGGTCTTCAAGGTGACAGAAGGGAAACTCCTCCGGGACCC
T
TTGTCACATCCTGGTGCAGAACAGACTGGAATACAGAACAAGACTCAGATGCACCCACTAATGTCGCAG
ATG
TCTGGCTCAGTTACTGCTTCTATGGCCACAGGTTCAGCTACCCGAAAGGGTATAGTGGTATTAATAG
AC
CCATTAGCAGCCAATGGGACAACAGACATGCATACCTCAGTTCCAAGAGTGAAAGGTGGGCAAAGAAA
T
ATTACTGATGACAGCAGAGGCCAGCCTTTTATCAAGAAGATGCACTTCACCATAAGGCTAACAGAAAGT
GCC
ATCACATACAGAGACATTGTAGTGAAGAAAGAGGATGGATTCACCCAGATAGTGCTATCAACTAGAT
CG
ACAGAAAAAAATGCACTGAATACAGAAGTAATTAAAGAAATGGTTAATGCTCTGAATAGCGCTGCTGC
A
GATGACAGCAAGCTCGTGCTGTTCAGTGCAGCTGGAAGTGTCTTTTGCTGCGGTCTTGATTTTGGGTAC
TTT
GTGAGGCACTTAAGGAATGACAGAAACACAGCAAGCCTTGAAATGGTGGACACCATCAAGAACTTTG
TG
AATACTTTTATTCAATTTAAAAAGCCTATTGTTGTATCAGTCAATGGCCCTGCCATTGGACTAGGTGC
A
TCCATCCTGCCTCTTTGTGATCTCGTGTGGGCTAATGAAAAGGCTTGGTTCCAAACCCCTTATACGACC
TTT
GGACAGAGTCCAGATGGCTGTTCTTCTATTACATTCCCCAAAATGATGGGTAAAGCATCTGCCAATG
AA
ATGTTAATTGCTGGGCGAAAGCTGACAGCACGGGAGGCATGCGCCAAAGGCCTGGTCTCTCAGGTATT
T
TTGACTGGAACTTTCACCCAAGAGGTTATGATTCAAATTAAGGAGCTTGCCTCATACAATGCAATTGTA
CTG
GAAGAATGTAAGGCCCTCGTTCGCTGTAATATTAAGTTGGAGTTGGAACAGGCCAATGAGAGAGAGT
GT
GAGGTGCTGAGGAAGATCTGGAGCTCAGCCCAAGGGATAGAATCCATGTTAAAGTATGTTGAAAATAA
A
ATTGATGAGTTTTAA


Translation (541 aa):
MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQKKLTWTTT
S
RIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNCKLFAASKNVRRKAASTLSDTKNMEIINSTIE
T
LAPDSPFDHKKTVSGFQKLEKLDPIAADQQDTVVFKVTEGKLLRDPLSHPGAEQTGIQNKTQMHPLMSQ
M
SGSVTASMATGSATRKGIVVLIDPLAANGTTDMHTSVPRVKGGQRNITDDSRGQPFIKKMHFTIRLTES
A
ITYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGY
F
VRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTT
F
GQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIV
L
EECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser