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Report for CCDS14847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14847.1 Public Mus musculus 1 Gsta3 23 108 98 CCDS HistoryNCBI Gene:14859Re-query CCDS DB by CCDS ID:14847.1Re-query CCDS DB by GeneID:14859See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14847.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027067.14 ENSMUSP00000027067.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027067.14Link to Ensembl Protein Viewer:ENSMUSP00000027067.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027067Re-query CCDS DB by Protein ID:ENSMUSP00000027067
Original member Current member EBI ENSMUST00000121676.7 ENSMUSP00000113262.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121676.7Link to Ensembl Protein Viewer:ENSMUSP00000113262.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121676Re-query CCDS DB by Protein ID:ENSMUSP00000113262
Original member NCBI NM_001077353.2 NP_001070821.1 Updated not alive Link to Nucleotide Sequence:NM_001077353.2Link to Protein Sequence:NP_001070821.1Re-query CCDS DB by Nucleotide ID:NM_001077353Re-query CCDS DB by Protein ID:NP_001070821
Current member NCBI NM_001077353.3 NP_001070821.1 Accepted alive Link to Nucleotide Sequence:NM_001077353.3Link to Protein Sequence:NP_001070821.1Re-query CCDS DB by Nucleotide ID:NM_001077353Re-query CCDS DB by Protein ID:NP_001070821Link to BLAST:NP_001070821.1
Original member NCBI NM_010356.4 NP_034486.2 Updated not alive Link to Nucleotide Sequence:NM_010356.4Link to Protein Sequence:NP_034486.2Re-query CCDS DB by Nucleotide ID:NM_010356Re-query CCDS DB by Protein ID:NP_034486
Current member NCBI NM_010356.5 NP_034486.2 Accepted alive Link to Nucleotide Sequence:NM_010356.5Link to Protein Sequence:NP_034486.2Re-query CCDS DB by Nucleotide ID:NM_010356Re-query CCDS DB by Protein ID:NP_034486Link to BLAST:NP_034486.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070821.1 221 P30115 221 100% 0 0
NP_034486.2 221 P30115 221 100% 0 0

Chromosomal Locations for CCDS 14847.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 21249772 21249858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21257331 21257382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21258848 21258980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21260048 21260189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21262793 21262924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21264843 21264962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGGCGGGGAAGCCAGTCCTTCATTACTTTGATGGCAGGGGAAGAATGGAGCCTATCCGGTGGCTCTTGG
CTGCAGCTGGTGTGGAGTTTGAAGAAAAATTTCTGAAAACTCGGGATGACCTGGCAAGGTTACGAAGTGA
TGGGAGTCTGATGTTCCAGCAAGTGCCCATGGTAGAGATCGACGGGATGAAACTGGTGCAGACCAAAGCC
ATTCTCAACTACATTGCCTCCAAATACAACCTCTATGGGAAGGACATGAAGGAGAGAGCCATCATTGACA
TGTACACAGAAGGAGTGGCGGATCTGGAGATAATGATTCTCTATTACCCCCACATGCCCCCTGAGGAGAA
AGAGGCAAGCCTTGCCAAGATCAAGGAACAAACCAGGAACCGTTACTTCCCTGCCTTTGAAAAGGTGTTG
AAGAGCCATGGACAAGATTATCTCGTTGGCAACAGGCTGAGCAGGGCTGATATTGCCCTGGTTGAACTCC
TCTACCATGTGGAAGAGCTGGACCCGGGCGTTGTGGACAACTTCCCTCTCCTGAAAGCGCTGAGAAGCAG
AGTCAGCAACCTCCCCACAGTGAAGAAGTTTCTTCAACCTGGCAGCCAGAGGAAGCCTTTTGATGACGCA
AAATGTGTTGAGTCAGCAAAGAAGATTTTCAGTTAA

Translation (221 aa):
MAGKPVLHYFDGRGRMEPIRWLLAAAGVEFEEKFLKTRDDLARLRSDGSLMFQQVPMVEIDGMKLVQTKA
ILNYIASKYNLYGKDMKERAIIDMYTEGVADLEIMILYYPHMPPEEKEASLAKIKEQTRNRYFPAFEKVL
KSHGQDYLVGNRLSRADIALVELLYHVEELDPGVVDNFPLLKALRSRVSNLPTVKKFLQPGSQRKPFDDA
KCVESAKKIFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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