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Report for CCDS14883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14883.1 Public Mus musculus 1 Ankrd39 23 108 98 CCDS HistoryNCBI Gene:109346Re-query CCDS DB by CCDS ID:14883.1Re-query CCDS DB by GeneID:109346See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14883.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001172.11 ENSMUSP00000001172.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001172.11Link to Ensembl Protein Viewer:ENSMUSP00000001172.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001172Re-query CCDS DB by Protein ID:ENSMUSP00000001172
Original member Current member NCBI NM_026241.4 NP_080517.1 Accepted alive Link to Nucleotide Sequence:NM_026241.4Link to Protein Sequence:NP_080517.1Re-query CCDS DB by Nucleotide ID:NM_026241Re-query CCDS DB by Protein ID:NP_080517Link to BLAST:NP_080517.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080517.1 183 Q9D2X0 183 100% 0 0

Chromosomal Locations for CCDS 14883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36539391 36539534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36541859 36542062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36542762 36542865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36547086 36547185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGGCGGCGCCGCACCTTTGCGCGGATGGCTCCTGCTGCTCTCACCCTAGTGCGGTGCCCGGGGTACAGC
AGACGCTGGAGGAGATGGACTTCGACAGGGGAATCTGGTCGGCTGCCCTGAATGGAGACCTGGGCCGTGT
GAAGTATTTCATCCAGAAGGCCACAGACCCTAGCCAGCCAGATTCTGCCGGCTACACCGCACTGCACTAC
GCCAGCCGCAACGGGCACTATGCTGTTTGCCAGTTTCTGCTGGAAAGTGGAGCGAAGTGTGACGCCCAGA
CCCACGGGGGCGCCACGGCTTTGCACCGGGCCAGCTACTGTGGGCACACGGAAATCGCACGGCTGCTGCT
ATCCCATGGGTCCAACCCCTGGCTGGTCGACAATGATGGCATGACCAGTCTGCATAAGGCTGCGGAGAAG
GGTCACGAGGACATTTGCTCCCTCCTGTTACAACACAGCCCAGCCCTGAAGGCCGTCCGGGATCGCAAAG
CACGCCTAGCATGTGACCTGCTGCCCTGCAACAGTGGCCTGTGGGACCTGCTGGCCAGCTGA

Translation (183 aa):
MAAPHLCADGSCCSHPSAVPGVQQTLEEMDFDRGIWSAALNGDLGRVKYFIQKATDPSQPDSAGYTALHY
ASRNGHYAVCQFLLESGAKCDAQTHGGATALHRASYCGHTEIARLLLSHGSNPWLVDNDGMTSLHKAAEK
GHEDICSLLLQHSPALKAVRDRKARLACDLLPCNSGLWDLLAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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