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Report for CCDS1493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1493.1 Public Homo sapiens 1 UTP25 24 110 108 CCDS HistoryNCBI Gene:27042Re-query CCDS DB by CCDS ID:1493.1Re-query CCDS DB by GeneID:27042See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1493.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000491415.7 ENSP00000419005.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000491415.7Link to Ensembl Protein Viewer:ENSP00000419005.1Re-query CCDS DB by Nucleotide ID:ENST00000491415Re-query CCDS DB by Protein ID:ENSP00000419005
Original member Current member NCBI NM_014388.7 NP_055203.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014388.7Link to Protein Sequence:NP_055203.4Re-query CCDS DB by Nucleotide ID:NM_014388Re-query CCDS DB by Protein ID:NP_055203Link to BLAST:NP_055203.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055203.4 756 Q68CQ4 756 100% 0 0

Chromosomal Locations for CCDS 1493.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 209828064 209828170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209830108 209830147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209830803 209831043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209833185 209833358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209835075 209835163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209836801 209837211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209838909 209839128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209840853 209841055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209842265 209842447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209842583 209842695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209843451 209843696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209851204 209851447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2271 nt):
ATGGGCAAACGCGGGAGCCGGAGCCAGAGCCAGCTACTCAACACCCTAACTAAAAAGCAGAAGAAACATC
TTCGAGATTTCGGCGAGGAGCATCCCTTCTATGACAGGGTTTCCAGAAAGGAAGCAAAGCCACAGATTTG
TCAACTGTCAGAGAGTTCAGATTCTTCAGATTCTGAAAGCGACTCAGAGAGTGAACCACAACAAGTTTCT
GGCTACCACAGACTACTTGCTACATTAAAGAATGTTTCTGAGGAAGAAGAGGAAGATGAGGAGGAGGAAG
AGGAAGAAGACAGTATTGTAGATGATGCAGAAATGAACGATGAAGATGGTGGTAGCGATGTCAGTGTGGA
AGAAGAGATGGCTGCAGAGTCTACTGAAAGTCCAGAGAATGTAGCTTTATCTGCTGACCCTGAGGGAAAA
GAAGATGGGGAAGAGCCACCGGGCACATCACAAACATCCCCCGAAGAGTTCACAGATGCAAAACACGAGT
CACTGTTCAGCCTGGAAACCAATTTTCTGGAAGAGGAAAGTGGAGACAACTCTTCTTTGAAAGCCTCTCA
AGATCCATTTCTTCAACATGTGAACAAAGAACTGAAAGAAAAAGCAATTCAGGCTGTTGCCACAAATCCC
AAAACTACCCACGAGCTTAAATGGCCTATTCTGGGCCAGCTTTTCTTTTCCTCTAAGTTTCAGAAGTTGG
AAACATTTAAACCCCCAAAGGATATTGACTTAAAGTCACTTCATCTCCAGAAGCCTCTGGAATCCACCTG
GACTAAGACCAACAGCCAGTTCCTATCTGGTCCCCAAAAATCAAGCAGCCCATTCACCCCCCTCCAGAAA
GAACTCTTCTTAATTATGAATTCTTACCGGGACCTGTTCTACCCGGAAAGGACTGCTCTGAAGAACGGGG
AAGAGATCCGCCATGTGTATTGCCTGCATGTGATAAATCACATCCTCAAAGCCAATGCCCAGGTGCTTGG
CAACAATAGCAGACGCCGAAGCCAGAAGTTTGGAGTGGGTGATGATGATGACTTCAGAGACCAAGGGTTA
ACAAGGCCCAAGGTACTGATAGTGGTGCCATTCCGGGAAGCTGCTTTGCGGGTGGTGCAGCTCTTCATCA
GCCTCCTCGAGGGTGACAGCAAGAAGAAAATCATTGTGAGCAACAAAAAGAGGTTTCAGGGAGAATATGG
ATCAGATCCCGAGGAGAGACCACCCAACTTGAAGAGGCCTGAGGATTATGAAGCCGTATTTGTGGGCAAT
ATTGATGACCACTTCAGGATTGGAGTGGCAATACTTCAGAGAAGCATCCGACTCTATGCCCCGTTTTACT
CCTCGGATATCCTCATTGCTTCCCCCCTGGGCTTGAGGACCATCATTGGTGGAGAAGGAGAGAAGAAGAG
AGATTTTGACTTTCTGTCTTCTATCGAGCTTCTCATCATTGATCAAGCTGACATTTACCTGATGCAGAAC
TGGGAGCATGTCCTGCATTTGATGAATCACATGAACCTACTACCCCTGGACTCACATGGGGTAGACTTTT
CTCGAGTGCGGATGTGGAGCCTCAATAATTGGTCCAAGTACTATCGCCAGACACTGCTATTTGGGGCCCT
TCAGGATGCCCAGATCAACTCAGTGTTCAACAAGTACTGTGTCAACATGCAAGGCCAGGTGGCCGTGAGG
AATGTCCCAATGACAGGCTCTATCAGTCATGTCCTGGTGCAGCTCCCACATGTCTTCCAGAGGATGGAAG
CTGAAAACCTAGCTTCAGTGATTGATGCCAGGTTTAACTTTTTTGTGAACAAGATTTTGCCACAGTATCG
TGATGCAGTCATGTCTCACACGCTCATCTATATCCCCTCCTACTTTGACTTCGTGCGTCTTCGAAATTAC
TTCAAGAAGGAGGAATTGAATTTTACCCACATCTGCGAGTACACGCAGAAGTCTGGTGTCTCCAGGGCCA
GACACTTCTTCCTTCAAGGAGAGAAACAGTTTCTACTTTTCACAGAGCGCTTCCATTTCTACAAAAGGTA
TACAATAAAAGGCATCAGGAACCTGATTTTCTATGAACTGCCGACATATCCACACTTTTACAGTGAAATC
TGTAATATGCTGAGAGCCACCAACAGAGGAGAAGAGGCCACGTGGACCTGCACTGTTCTCTACTCCAAAT
ATGATGCCCAGAGGTTAGCTGCCGTGGTTGGTGTGGAGCGGGCGGCACAGATGCTACAGTCCAACAAGAA
TGTCCACCTCTTCATTACTGGAGAAAAATGA

Translation (756 aa):
MGKRGSRSQSQLLNTLTKKQKKHLRDFGEEHPFYDRVSRKEAKPQICQLSESSDSSDSESDSESEPQQVS
GYHRLLATLKNVSEEEEEDEEEEEEEDSIVDDAEMNDEDGGSDVSVEEEMAAESTESPENVALSADPEGK
EDGEEPPGTSQTSPEEFTDAKHESLFSLETNFLEEESGDNSSLKASQDPFLQHVNKELKEKAIQAVATNP
KTTHELKWPILGQLFFSSKFQKLETFKPPKDIDLKSLHLQKPLESTWTKTNSQFLSGPQKSSSPFTPLQK
ELFLIMNSYRDLFYPERTALKNGEEIRHVYCLHVINHILKANAQVLGNNSRRRSQKFGVGDDDDFRDQGL
TRPKVLIVVPFREAALRVVQLFISLLEGDSKKKIIVSNKKRFQGEYGSDPEERPPNLKRPEDYEAVFVGN
IDDHFRIGVAILQRSIRLYAPFYSSDILIASPLGLRTIIGGEGEKKRDFDFLSSIELLIIDQADIYLMQN
WEHVLHLMNHMNLLPLDSHGVDFSRVRMWSLNNWSKYYRQTLLFGALQDAQINSVFNKYCVNMQGQVAVR
NVPMTGSISHVLVQLPHVFQRMEAENLASVIDARFNFFVNKILPQYRDAVMSHTLIYIPSYFDFVRLRNY
FKKEELNFTHICEYTQKSGVSRARHFFLQGEKQFLLFTERFHFYKRYTIKGIRNLIFYELPTYPHFYSEI
CNMLRATNRGEEATWTCTVLYSKYDAQRLAAVVGVERAAQMLQSNKNVHLFITGEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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