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Report for CCDS15001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15001.1 Public Mus musculus 1 Fastkd2 23 108 98 CCDS HistoryNCBI Gene:75619Re-query CCDS DB by CCDS ID:15001.1Re-query CCDS DB by GeneID:75619See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15001.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027103.6 ENSMUSP00000027103.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027103.6Link to Ensembl Protein Viewer:ENSMUSP00000027103.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027103Re-query CCDS DB by Protein ID:ENSMUSP00000027103
Original member Current member NCBI NM_172422.3 NP_766010.1 Accepted alive Link to Nucleotide Sequence:NM_172422.3Link to Protein Sequence:NP_766010.1Re-query CCDS DB by Nucleotide ID:NM_172422Re-query CCDS DB by Protein ID:NP_766010Link to BLAST:NP_766010.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766010.1 689 Q922E6 689 100% 0 0

Chromosomal Locations for CCDS 15001.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 63731487 63732221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63734732 63734835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63735463 63735571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63735845 63735968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63737779 63737918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63739182 63739354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63745842 63746005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63747958 63748170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63749686 63749770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63751264 63751378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63752297 63752404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2070 nt):
ATGAATAGCAAAGCACGTTCCTTGTTATGGACCATCCGACGATTCAGTACGTTACTTCCAAGAAGCAGAG
CTTTGAGGATAGATCCATTGGGAACTTGCAGACCAGAGGTTATTCATTCAAAATGGAACCCAAGAAACCA
TCGGCTAAATGTTTTTGATGAGGGATTGCAACCATCTGTTAGATACCTCTTTCAGGATATATTTATTTCT
AAATCAGTAGATGGTTGTATTCAAACTAAAGGCATAAGCCATTCAGCCGTTTTTAAACCTGATAGGCTGC
TTTGTCCTAGAAGACTGTCCTTTGATGCAAAACATTCTTTTGTCTCTGATGGGACATCTGATCATGATTT
AAAGAAAATAAACTTTCATCATACCTCCAGTGAAGATGTGTTCACCAAGAAAGTAAGACCAACCCCTGTG
AATTATAAAAAGCTAGCCCAGGAGTGTAACTCTCTGAGTGATGTGCTGGACACATTTTCAAAAGCACCTA
CATTTCCTGGTAGTAACTATTTCTTAGCAATGTGGATAATTGCCAAAAGGATATCTGAAGACAAGAGGCG
CTTTGAGAGACAGCTGATGTTCAGTCACCCTGCCTTTAACCAGCTGTGTGAGCAGATGATGAGAGAAGCC
AAGATTATGCACTATGACCACCTCTTGTTCAGCCTTAATGCTATAGTGAAGCTGGGAATCCCTCAGAACA
CTCTTATGGTACAGACTTTGCTGAGGACGATTCAGGAGCGCATCAATGAGTGTGATGAGAGATGTCTTTC
AATTTTGTCAACCGCTTTAGTGTCAATGGAGCCATGCATGAATGTGAATGCGCTTCGAGCAGGGTTGCGA
ATCCTAGTTGATCAGCAAGTTTGGAACATAAAACATGTCTTCACCTTACAAACAGTGATGAAATGTATTG
GGAAAGACGCACCATCTGCACTTAAGAAGAAATTGGAGATGAAAGCCTTGAAGGAGTTAGGCAGATTTTC
CATCTTGAATAGCCAGCACATGTTTGAAGTCTTAGCAGCTATGGATCTCCGCTCTGTTGTCCTTCTGAAT
GAATGCAGTAAGGTTGTCATAGATAATGTCCATGGGTGTCCTTTTAAAGTATTGATCAGCATACTGCAGT
CCTGTAGAGACCTCCGATACCAAAATGAAGATCTCTTCAAAAGCATAGCAGAATATGTGGCTACAACCTT
TGACATCTGGAAGTTGAAACAAGTTATCTTTTTCCTCTTATTATTTGAAACTCTTGGTTTTCGACCTCCT
GGTTTGATGGACAAGCTTATGGAGAAAGTAGTACAGGAGCCTGGCTCTCTAAACGTGAAGAACATCGTTT
CTATCCTGCATGTGTATTCTTCTCTCAATCATGTTCACAAAATCCACAACAGAGAGTTCCTAGAAGCTCT
GGCGAGTGCTCTGACTGGCTGTCTTCACCACATTTCTTCTGAAAGCCTGTTGAATGCTGTGCATTCGTTT
TGCATGATGAATTATTTCCCTCTGGCCCCTATTAACCAGCTTATCAAAGAGAATATCATCAACGAACTGC
TGACTTCGGGTGACACAGAGAAGAATATTCATAAGCTTCATGTTTTGAATACTTGTCTGAAACTTGATGA
AAGTACTTACAAATCTGTGCACATACCGTTGCCACAGCTGCCACTGTCAGCATCACAGCCAAACGAGAAG
CTTGCAGAGGTCCTCAGCAGGCTTCTGGAAGGGGAAGGACGCTTCTCGAGAAATGTGCCATTGCCACATA
ATTATCACATTGATTTTGAAATCAGAATGGATACTAACAGGACCCAAGTATTTTCATTTTCTGATGTAGA
TGCAAGTTCTGCCACAAACATGCAGAGAGTAGCAGTGCTGTGTGTTCCTAAGTCTGTTTACTGTTTAAAT
TCATGCCACCCCAGAGGATTGATGGCCATGAAAATCCGACATTTGAATGTAATGGGCTTCCATGTGATCT
TGATCCATAACTGGGAGCTGAAGAAACTAAAGATGGAGGATGCGGTCACATTTGTGAGGAAGAAGATCTA
TTCAGATGAAGTGCTTCCCACTGCTGACACAACCGTGTAA

Translation (689 aa):
MNSKARSLLWTIRRFSTLLPRSRALRIDPLGTCRPEVIHSKWNPRNHRLNVFDEGLQPSVRYLFQDIFIS
KSVDGCIQTKGISHSAVFKPDRLLCPRRLSFDAKHSFVSDGTSDHDLKKINFHHTSSEDVFTKKVRPTPV
NYKKLAQECNSLSDVLDTFSKAPTFPGSNYFLAMWIIAKRISEDKRRFERQLMFSHPAFNQLCEQMMREA
KIMHYDHLLFSLNAIVKLGIPQNTLMVQTLLRTIQERINECDERCLSILSTALVSMEPCMNVNALRAGLR
ILVDQQVWNIKHVFTLQTVMKCIGKDAPSALKKKLEMKALKELGRFSILNSQHMFEVLAAMDLRSVVLLN
ECSKVVIDNVHGCPFKVLISILQSCRDLRYQNEDLFKSIAEYVATTFDIWKLKQVIFFLLLFETLGFRPP
GLMDKLMEKVVQEPGSLNVKNIVSILHVYSSLNHVHKIHNREFLEALASALTGCLHHISSESLLNAVHSF
CMMNYFPLAPINQLIKENIINELLTSGDTEKNIHKLHVLNTCLKLDESTYKSVHIPLPQLPLSASQPNEK
LAEVLSRLLEGEGRFSRNVPLPHNYHIDFEIRMDTNRTQVFSFSDVDASSATNMQRVAVLCVPKSVYCLN
SCHPRGLMAMKIRHLNVMGFHVILIHNWELKKLKMEDAVTFVRKKIYSDEVLPTADTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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