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Report for CCDS15045.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15045.1 Public Mus musculus 1 Pnkd 23 108 98 CCDS HistoryNCBI Gene:56695Re-query CCDS DB by CCDS ID:15045.1Re-query CCDS DB by GeneID:56695See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15045.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087225.5 ENSMUSP00000084477.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087225.5Link to Ensembl Protein Viewer:ENSMUSP00000084477.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000087225Re-query CCDS DB by Protein ID:ENSMUSP00000084477
Original member Current member NCBI NM_019999.2 NP_064383.1 Accepted alive Link to Nucleotide Sequence:NM_019999.2Link to Protein Sequence:NP_064383.1Re-query CCDS DB by Nucleotide ID:NM_019999Re-query CCDS DB by Protein ID:NP_064383Link to BLAST:NP_064383.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064383.1 360 Q69ZP3-4 360 100% 0 0

Chromosomal Locations for CCDS 15045.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74332631 74332791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74347385 74347500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74347652 74347764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74348763 74348821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74349308 74349400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74349714 74349877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74350617 74350703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74351537 74351652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74351758 74351931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGGCTTGGCAGGGCTGGCTCGCGCCTTGGTTGTGGGTCTCCGGCTGTTGGCTGCTATTCTTCGCCTTCG
TGCTGCTCCTGAGTCCCCGCAGCTGCCAAGAACAGCGGGGTTTCCGCGGCCTCCTCATGACGCGCAGCCA
GCGGCTGCTCTTCCGAATCGGGTATAGCCTGTACACCCGAACCTGGCTTGGGTACCTCTTCTACCGACAG
CAGCTTCGGAGGGCTCGGAATCGCTATCCCAAAGGCCACTCCAAAACTCAGCCCCGCCTCTTCAATGGAG
TGAAGGTGCTTCCCATCCCTGTCCTCTCGGACAACTACAGCTACCTCATCATCGACACCCAGGCTGGGCT
GGCAGTGGCTGTGGACCCCTCAGACCCGAGGGCTGTGCAGGCTTCCATTGAAAAGGAAAGAGTTAACTTG
GTTGCCATTCTCTGCACCCACAAGCACTGGGACCACAGTGGAGGGAACCGTGACCTCAGCCGGCGGCACA
GGGACTGTCGAGTGTATGGGAGCCCTCAGGATGGTATCCCCTACCTCACCCACCCCCTGTGTCATCAAGA
TGTGGTCAGCGTGGGACGACTTCAGATTCGAGCCCTAGCCACCCCTGGCCACACTCAAGGCCATCTGGTC
TACCTGCTGGATGGGGAGCCCTACAAAGGTCCTTCCTGCCTCTTCTCAGGGGACCTGCTCTTCCTCTCTG
GCTGTGGACGGACCTTCGAAGGCACAGCGGAGACCATGCTGAGCTCACTGGACACTGTGTTAGACCTGGG
GGATGACACCCTGCTGTGGCCTGGGCATGAATACGCAGAAGAGAACCTGGGCTTTGCAGGCGTGGTGGAG
CCCGAGAACTTGGCTCGTGAGAGGAAGATGCAGTGGGTACAGAGGCAACGGATGGAACGCAAGAGCACAT
GCCCATCCACCCTGGGAGAGGAACGCGCCTACAACCCATTCCTGAGAACCCATTGCCTGGAACTACAGGA
GGCTCTGGGGCCAGGGCCAGGCCCCACCAGTGATGACGGCTGCTCCCGGGCCCAGCTCCTGGAGGAGCTG
CGCCGCCTGAAGGACATGCATAAAAGCAAGTGA

Translation (360 aa):
MAWQGWLAPWLWVSGCWLLFFAFVLLLSPRSCQEQRGFRGLLMTRSQRLLFRIGYSLYTRTWLGYLFYRQ
QLRRARNRYPKGHSKTQPRLFNGVKVLPIPVLSDNYSYLIIDTQAGLAVAVDPSDPRAVQASIEKERVNL
VAILCTHKHWDHSGGNRDLSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGHTQGHLV
YLLDGEPYKGPSCLFSGDLLFLSGCGRTFEGTAETMLSSLDTVLDLGDDTLLWPGHEYAEENLGFAGVVE
PENLARERKMQWVQRQRMERKSTCPSTLGEERAYNPFLRTHCLELQEALGPGPGPTSDDGCSRAQLLEEL
RRLKDMHKSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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