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Report for CCDS1539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1539.1 Public Homo sapiens 1 FBXO28 24 110 108 CCDS HistoryNCBI Gene:23219Re-query CCDS DB by CCDS ID:1539.1Re-query CCDS DB by GeneID:23219See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1539.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366862.10 ENSP00000355827.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366862.10Link to Ensembl Protein Viewer:ENSP00000355827.5Re-query CCDS DB by Nucleotide ID:ENST00000366862Re-query CCDS DB by Protein ID:ENSP00000355827
Original member Current member NCBI NM_015176.4 NP_055991.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015176.4Link to Protein Sequence:NP_055991.1Re-query CCDS DB by Nucleotide ID:NM_015176Re-query CCDS DB by Protein ID:NP_055991Link to BLAST:NP_055991.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055991.1 368 Q9NVF7-1 368 100% 0 0

Chromosomal Locations for CCDS 1539.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 224114130 224114396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224130472 224130581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224134074 224134212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224153142 224153337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224157352 224157746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGCGGCAGCGGCGGAGGAGCGGATGGCAGAGGAAGGAGGCGGCGGCCAAGGCGACGGCGGTTCCTCTT
TGGCCTCCGGCTCTACCCAGCGACAGCCTCCACCGCCCGCGCCACAGCACCCGCAGCCGGGGTCCCAGGC
GCTCCCAGCCCCCGCGCTGGCTCCGGACCAGCTGCCTCAAAACAACACGCTTGTGGCGCTGCCCATCGTA
GCCATCGAGAACATCCTCAGCTTTATGTCCTACGACGAAATTAGCCAGCTCCGCCTGGTTTGTAAAAGAA
TGGACTTGGTCTGCCAGAGAATGTTGAATCAGGGATTTCTGAAAGTGGAGAGGTACCATAATCTATGTCA
GAAACAAGTTAAAGCACAACTCCCAAGGAGAGAGTCAGAAAGGAGAAACCATTCATTAGCTCGTCATGCA
GACATTCTTGCTGCTGTTGAAACAAGGCTGTCACTATTAAATATGACTTTCATGAAATATGTGGATTCCA
ATCTCTGTTGCTTCATCCCAGGAAAGGTGATTGATGAGATTTATCGTGTGTTGAGATATGTCAATTCTAC
CAGAGCCCCTCAACGAGCTCATGAAGTACTTCAAGAATTAAGGGATATATCCTCTATGGCAATGGAGTAC
TTTGATGAAAAGATTGTTCCAATTTTAAAGAGGAAATTACCAGGATCAGATGTTTCTGGAAGACTCATGG
GCTCTCCTCCAGTTCCAGGACCGTCTGCAGCCCTAACAACAATGCAGCTCTTCTCCAAGCAAAATCCTTC
AAGACAAGAGGTTACCAAACTCCAGCAGCAGGTTAAAACAAATGGTGCTGGCGTGACTGTTCTCAGGCGT
GAAATTTCTGAGCTTCGCACCAAAGTGCAAGAACAGCAAAAACAGCTTCAAGACCAGGACCAGAAACTGC
TAGAGCAGACCCAGATCATAGGTGAACAAAATGCACGGTTGGCAGAGCTAGAACGCAAACTACGAGAAGT
AATGGAAAGTGCTGTAGGAAATTCCTCAGGGTCCGGGCAGAATGAGGAGTCTCCTCGGAAACGAAAAAAG
GCCACGGAAGCCATAGACTCTCTTAGGAAATCTAAACGTCTTCGGAATAGAAAGTAA

Translation (368 aa):
MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQNNTLVALPIV
AIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQVKAQLPRRESERRNHSLARHA
DILAAVETRLSLLNMTFMKYVDSNLCCFIPGKVIDEIYRVLRYVNSTRAPQRAHEVLQELRDISSMAMEY
FDEKIVPILKRKLPGSDVSGRLMGSPPVPGPSAALTTMQLFSKQNPSRQEVTKLQQQVKTNGAGVTVLRR
EISELRTKVQEQQKQLQDQDQKLLEQTQIIGEQNARLAELERKLREVMESAVGNSSGSGQNEESPRKRKK
ATEAIDSLRKSKRLRNRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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