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Report for CCDS15500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15500.1 Public Mus musculus 1 Slamf7 23 108 98 CCDS HistoryNCBI Gene:75345Re-query CCDS DB by CCDS ID:15500.1Re-query CCDS DB by GeneID:75345See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15500.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111276.8 ENSMUSP00000106907.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111276.8Link to Ensembl Protein Viewer:ENSMUSP00000106907.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111276Re-query CCDS DB by Protein ID:ENSMUSP00000106907
Original member Current member EBI ENSMUST00000192195.5 ENSMUSP00000141871.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192195.5Link to Ensembl Protein Viewer:ENSMUSP00000141871.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192195Re-query CCDS DB by Protein ID:ENSMUSP00000141871
Original member NCBI NM_144539.5 NP_653122.2 Updated not alive Link to Nucleotide Sequence:NM_144539.5Link to Protein Sequence:NP_653122.2Re-query CCDS DB by Nucleotide ID:NM_144539Re-query CCDS DB by Protein ID:NP_653122
Current member NCBI NM_144539.6 NP_653122.2 Accepted alive Link to Nucleotide Sequence:NM_144539.6Link to Protein Sequence:NP_653122.2Re-query CCDS DB by Nucleotide ID:NM_144539Re-query CCDS DB by Protein ID:NP_653122Link to BLAST:NP_653122.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653122.2 333 Q8BHK6-1 333 99.6997% 0 1

Chromosomal Locations for CCDS 15500.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171634925 171634996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171636312 171636374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171637297 171637400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171638663 171638785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171638996 171639268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171640956 171641267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171648873 171648927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGGCTCGTTTCTCAACGTACATCATCTTTACCTCTGTCCTCTGTCAGCTAACAGTCACAGCAGCTTCTG
GAACTCTGAAGAAGGTGGCCGGTGCCCTTGATGGATCTGTGACATTCACTCTGAATATCACTGAAATAAA
GGTTGACTATGTTGTATGGACGTTCAACACATTCTTTCTTGCCATGGTAAAAAAAGACGGCGTTACATCA
CAAAGTAGTAACAAAGAAAGGATAGTCTTTCCAGATGGACTCTACTCCATGAAGCTCAGCCAATTGAAGA
AGAATGACTCTGGAGCCTACCGTGCAGAGATTTACAGTACATCGAGTCAGGCTTCCTTAATCCAGGAGTA
TGTGCTGCATGTCTACAAGCATTTGTCAAGGCCCAAGGTCACCATAGATCGGCAAAGCAACAAGAATGGC
ACCTGCGTAATCAATCTGACATGTTCCACGGATCAGGACGGGGAGAATGTAACCTACAGCTGGAAAGCTG
TGGGGCAGGGGGACAATCAGTTTCATGATGGTGCCACCCTCTCCATCGCCTGGAGATCAGGAGAGAAAGA
CCAGGCCTTAACATGCATGGCCAGGAATCCAGTCAGCAACAGTTTCTCAACCCCCGTCTTTCCCCAGAAG
CTCTGTGAAGATGCTGCCACGGATCTAACTTCACTCAGGGGCATCCTATACATCCTGTGCTTCTCAGCAG
TGCTCATCCTATTTGCTGTCTTGCTGACTATTTTTCATACTATGTGGATAAAGAAAGGAAAAGGATGTGA
GGAAGACAAGAAGAGAGTGGACAGGCACCAGGAAATGCCCGACTTGTGCCCTCACTTAGAGGAGAACGCA
GACTATGACACAATCCCTTACACGGAAAAAAGAAGACCAGAAGAAGATGCACCAAACACATTTTATTCCA
CTGTGCAGATCCCCAAAGTGGTAAAGAGTCCCAGCTCCCTGCCTGCAAAGCCACTCGTGCCAAGGTCATT
AAGCTTTGAAAATGTTATCTAG

Translation (333 aa):
MARFSTYIIFTSVLCQLTVTAASGTLKKVAGALDGSVTFTLNITEIKVDYVVWTFNTFFLAMVKKDGVTS
QSSNKERIVFPDGLYSMKLSQLKKNDSGAYRAEIYSTSSQASLIQEYVLHVYKHLSRPKVTIDRQSNKNG
TCVINLTCSTDQDGENVTYSWKAVGQGDNQFHDGATLSIAWRSGEKDQALTCMARNPVSNSFSTPVFPQK
LCEDAATDLTSLRGILYILCFSAVLILFAVLLTIFHTMWIKKGKGCEEDKKRVDRHQEMPDLCPHLEENA
DYDTIPYTEKRRPEEDAPNTFYSTVQIPKVVKSPSSLPAKPLVPRSLSFENVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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