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Report for CCDS15503.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15503.1 Public Mus musculus 1 Cd84 23 108 98 CCDS HistoryNCBI Gene:12523Re-query CCDS DB by CCDS ID:15503.1Re-query CCDS DB by GeneID:12523See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15503.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042302.6 ENSMUSP00000047024.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042302.6Link to Ensembl Protein Viewer:ENSMUSP00000047024.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042302Re-query CCDS DB by Protein ID:ENSMUSP00000047024
Original member Current member EBI ENSMUST00000155802.7 ENSMUSP00000120881.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155802.7Link to Ensembl Protein Viewer:ENSMUSP00000120881.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155802Re-query CCDS DB by Protein ID:ENSMUSP00000120881
Original member NCBI NM_013489.3 NP_038517.1 Updated not alive Link to Nucleotide Sequence:NM_013489.3Link to Protein Sequence:NP_038517.1Re-query CCDS DB by Nucleotide ID:NM_013489Re-query CCDS DB by Protein ID:NP_038517
Current member NCBI NM_013489.4 NP_038517.1 Accepted alive Link to Nucleotide Sequence:NM_013489.4Link to Protein Sequence:NP_038517.1Re-query CCDS DB by Nucleotide ID:NM_013489Re-query CCDS DB by Protein ID:NP_038517Link to BLAST:NP_038517.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038517.1 329 Q18PI6-1 329 99.3921% 0 2

Chromosomal Locations for CCDS 15503.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171840658 171840703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171851803 171852135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171872697 171872948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171873305 171873439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171884585 171884679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171885571 171885633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171886361 171886426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGCCCAGCGCCATCTGTGGATCTGGTTCCTTTGCCTACAAACCTGGTCTGAAGCAGCAGGAAAAGATG
CAGACCCGGTGGTAATGAATGGGATTCTTGGGGAGTCAGTTACTTTCCTCTTAAATATTCAAGAACCAAA
GAAAATTGACAACATTGCCTGGACTTCTCAATCATCTGTTGCTTTTATAAAACCAGGAGTCAATAAAGCT
GAAGTTACCATAACCCAGGGCACTTATAAAGGACGAATAGAAATCATAGATCAGAAGTATGACCTGGTCA
TTAGAGACCTGAGGATGGAAGATGCAGGAACTTACAAAGCAGACATCAATGAAGAGAATGAGGAAACCAT
CACCAAGATCTACTACCTTCATATCTACCGTCGACTTAAAACACCAAAAATTACACAGAGTTTGATATCA
TCTTTGAACAATACCTGTAATATCACACTGACATGCTCTGTGGAAAAGGAAGAAAAGGATGTCACATATA
GCTGGAGTCCCTTTGGAGAGAAAAGCAATGTCCTTCAAATCGTCCACTCCCCCATGGACCAAAAACTGAC
CTACACATGTACAGCCCAGAACCCTGTCAGCAACAGTTCTGACTCTGTCACTGTCCAGCAGCCATGTACA
GACACTCCAAGCTTCCATCCTCGCCATGCTGTGTTGCCAGGAGGATTGGCCGTGCTCTTTCTGCTTATTC
TCATTCCGATGTTGGCATTTCTGTTCCGTTTGTATAAGAGAAGGCGAGACAGGATTGTCCTGGAAGCAGA
TGATGTCTCAAAGAAAACAGTATATGCTGTAGTTTCAAGAAATGCTCAACCCACAGAGTCCAGAATCTAT
GATGAAATCCCTCAGTCCAAGATGCTGTCCTGTAAGAAAGATCCGGTGACCACCATTTATTCCTCAGTGC
AGCTTTCTGAGAAGATGAAGGAAACCAACATGAAGGACAGAAGTCTGCCTAAGGCTTTGGGTAATGAAAT
TGTTGTCTAG

Translation (329 aa):
MAQRHLWIWFLCLQTWSEAAGKDADPVVMNGILGESVTFLLNIQEPKKIDNIAWTSQSSVAFIKPGVNKA
EVTITQGTYKGRIEIIDQKYDLVIRDLRMEDAGTYKADINEENEETITKIYYLHIYRRLKTPKITQSLIS
SLNNTCNITLTCSVEKEEKDVTYSWSPFGEKSNVLQIVHSPMDQKLTYTCTAQNPVSNSSDSVTVQQPCT
DTPSFHPRHAVLPGGLAVLFLLILIPMLAFLFRLYKRRRDRIVLEADDVSKKTVYAVVSRNAQPTESRIY
DEIPQSKMLSCKKDPVTTIYSSVQLSEKMKETNMKDRSLPKALGNEIVV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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