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Report for CCDS1565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1565.1 Public Homo sapiens 1 ARF1 24 110 108 CCDS HistoryNCBI Gene:375Re-query CCDS DB by CCDS ID:1565.1Re-query CCDS DB by GeneID:375See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1565.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272102.10 ENSP00000272102.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272102.10Link to Ensembl Protein Viewer:ENSP00000272102.5Re-query CCDS DB by Nucleotide ID:ENST00000272102Re-query CCDS DB by Protein ID:ENSP00000272102
Original member Current member EBI ENST00000478424.5 ENSP00000514653.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000478424.5Link to Ensembl Protein Viewer:ENSP00000514653.1Re-query CCDS DB by Nucleotide ID:ENST00000478424Re-query CCDS DB by Protein ID:ENSP00000514653
Original member Current member EBI ENST00000470558.5 ENSP00000514654.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000470558.5Link to Ensembl Protein Viewer:ENSP00000514654.1Re-query CCDS DB by Nucleotide ID:ENST00000470558Re-query CCDS DB by Protein ID:ENSP00000514654
Original member Current member EBI ENST00000478336.5 ENSP00000514657.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000478336.5Link to Ensembl Protein Viewer:ENSP00000514657.1Re-query CCDS DB by Nucleotide ID:ENST00000478336Re-query CCDS DB by Protein ID:ENSP00000514657
Original member Current member NCBI NM_001024226.2 NP_001019397.1 Accepted alive Link to Nucleotide Sequence:NM_001024226.2Link to Protein Sequence:NP_001019397.1Re-query CCDS DB by Nucleotide ID:NM_001024226Re-query CCDS DB by Protein ID:NP_001019397Link to BLAST:NP_001019397.1
Original member Current member NCBI NM_001024227.1 NP_001019398.1 Accepted alive Link to Nucleotide Sequence:NM_001024227.1Link to Protein Sequence:NP_001019398.1Re-query CCDS DB by Nucleotide ID:NM_001024227Re-query CCDS DB by Protein ID:NP_001019398Link to BLAST:NP_001019398.1
Original member Current member NCBI NM_001024228.2 NP_001019399.1 Accepted alive Link to Nucleotide Sequence:NM_001024228.2Link to Protein Sequence:NP_001019399.1Re-query CCDS DB by Nucleotide ID:NM_001024228Re-query CCDS DB by Protein ID:NP_001019399Link to BLAST:NP_001019399.1
Original member Current member NCBI NM_001658.4 NP_001649.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001658.4Link to Protein Sequence:NP_001649.1Re-query CCDS DB by Nucleotide ID:NM_001658Re-query CCDS DB by Protein ID:NP_001649Link to BLAST:NP_001649.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019397.1 181 P84077 181 100% 0 0
NP_001019398.1 181 P84077 181 100% 0 0
NP_001019399.1 181 P84077 181 100% 0 0
NP_001649.1 181 P84077 181 100% 0 0

Chromosomal Locations for CCDS 1565.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 228097115 228097262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228097342 228097452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228097591 228097715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228097852 228098013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGGGGAACATCTTCGCCAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGAAATGCGCATCCTCATGGTGG
GCCTGGATGCTGCAGGGAAGACCACGATCCTCTACAAGCTTAAGCTGGGTGAGATCGTGACCACCATTCC
CACCATAGGCTTCAACGTGGAAACCGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGACGTGGGTGGC
CAGGACAAGATCCGGCCCCTGTGGCGCCACTACTTCCAGAACACACAAGGCCTGATCTTCGTGGTGGACA
GCAATGACAGAGAGCGTGTGAACGAGGCCCGTGAGGAGCTCATGAGGATGCTGGCCGAGGACGAGCTCCG
GGATGCTGTCCTCCTGGTGTTCGCCAACAAGCAGGACCTCCCCAACGCCATGAATGCGGCCGAGATCACA
GACAAGCTGGGGCTGCACTCACTACGCCACAGGAACTGGTACATTCAGGCCACCTGCGCCACCAGCGGCG
ACGGGCTCTATGAAGGACTGGACTGGCTGTCCAATCAGCTCCGGAACCAGAAGTGA

Translation (181 aa):
MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG
QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT
DKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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