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Report for CCDS15701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15701.1 Public Mus musculus 2 Slc39a12 23 108 98 CCDS HistoryNCBI Gene:277468Re-query CCDS DB by CCDS ID:15701.1Re-query CCDS DB by GeneID:277468See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 15701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082290.7 ENSMUSP00000080911.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082290.7Link to Ensembl Protein Viewer:ENSMUSP00000080911.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000082290Re-query CCDS DB by Protein ID:ENSMUSP00000080911
Original member NCBI NM_001012305.2 NP_001012305.1 Updated not alive Link to Nucleotide Sequence:NM_001012305.2Link to Protein Sequence:NP_001012305.1Re-query CCDS DB by Nucleotide ID:NM_001012305Re-query CCDS DB by Protein ID:NP_001012305
Current member NCBI NM_001012305.3 NP_001012305.1 Accepted alive Link to Nucleotide Sequence:NM_001012305.3Link to Protein Sequence:NP_001012305.1Re-query CCDS DB by Nucleotide ID:NM_001012305Re-query CCDS DB by Protein ID:NP_001012305Link to BLAST:NP_001012305.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012305.1 689 Q5FWH7-1 689 100% 0 0

Chromosomal Locations for CCDS 15701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 14389321 14389578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14396072 14396353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14400139 14400346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14404943 14405115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14407440 14407614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14420056 14420228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14434206 14434355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14435659 14435766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14444012 14444078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14449767 14449925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14451956 14452143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14494421 14494549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2070 nt):
ATGTGCTTCTGGACCAATCTTTCAGTGTGGATGATCCTACTGTCCCACTCCCTCAGCCTCGTTTCCTCTA
CTGAGACCGGCAAAACCCTCACTCAGAATAACAGCAGAGCTGGGAGCCAAGGCCTGCTAGAAGTTCTGAG
GGTCCTCTCTGCTGGTGACCACTGGTCCCTCAACCATCCACAAAGCCTCATCAAAATTCTGTTGGAGAGG
ACTGGGTGTCCACAGAGAACAGATTGGACACAAGGAGACTGCAAGCTGTGTTTGGAAGCAGATGCACTGT
TACTCACAGCTGGGGGAAATTTGGAGGATGAGCTAAGAGAGGAGGTAGTCCAGAGAGTTTCTCTTCTTCT
CCTCTACTACATAATTCATCAGGAAGAGATCTGTTCTTCCAAGCTCAACATGAGCAACAGAGAATATGAG
TTTTACCTGCACAGCCTACTCGGCCTTAGGCAGGATGAAGACTCCTATTTCCTTTCAGAGAAGGAGACTG
ATGACATCTTGGCTTTCACCAGGAAGTACTTTGGCACTTCCAGTAGCCAGTGTATGGAAACTAAGATTCT
GCAGAGGGAATCTGGCATTCAGGGCAGCAATGGTGCTGATGAAAAGACACTTCCTCAGCTGGCAGCAACC
ATCATCGCTCTGTCACTCCAAGGAGTTTGTCTGGGAAGAAAAGCCTTGCCTTCTCCAGATGATTTTACAG
AGTATATTTTCAGTTTCCTGAATAGTACCAATACCCTCCACCTATCTGAAATAGAGCAACTTCTGAACAT
GCTCACGACCAGAAGGACCTGTGCTAAAGAGGATAAATACCTCCATCAATACCAAAGGAAACAAAACACA
GAGGAACACAGTTTGAGAGACCCCAAGACATCTACAGCAATGGACAAAGAGTCTGATGATCATTCTCCTT
CCTGGGATCAGGCTTGCTTCTCTGCTAGGCAGTTGGTGGAGATATTTCTACAGAATCATAGCAGTCTGTC
CATTTCTAAGGAGGACTTTAAGCAGCTAAGTCCAGGGATCATCCAGCAACTTCTCAGCTGCTCTTGTCAG
ATGCCCAAGGACCAGCAAGCAAAGCCCCCACCCACCACTCTGGAGAAATATGGCTACAGTACAGTGGCAG
TGACACTCCTAACCTTGGGCTCCATGCTTGGGACAGCGCTGGTCCTTTTCCACAGCTGTGAGGAGAACTA
CAGTCTTATTTTACAGCTGTTCGTGGGTTTGGCTGTGGGGACGCTCTCTGGGGATGCCCTGCTCCATCTC
ATACCTCAGGTTCTTGGTTTACATAAGCAGGAAGCAGAGTTTGGGCATTTCCATGAAAGCCAAAGTCCTA
TTTGGAAGCTGTTGGGACTACTTGGAGGCATCCATGGATTTTTCTTGATAGAAAAATGTTTTATCCTTCT
TGTATCACCAAATACCAAGGGTCTGCCATTAGTTAATGAACATGTGGGACATACACACCATCTTGGACTC
AATCCAGAATTAAATGACCAGTCAAGTGGAGGCAAGTCTATCTCAACCATCCAACTGAAAGGCCCAGAAG
ATTCACAGACAACTGTGCTACCCATAGGCAATGTGCCAGCCTCCAACAGAAATGGCAAAACCATCAGCTT
ATTGGCCATTATGATCCTGGTTGGAGATAGCCTGCACAATTTTGCAGATGGCCTAGTAATAGGCACAGCC
TTCTCCTCTTCATTGGAGTCAGGAGTGACCACAACAATTGCTATCTTGTGTCATGAAATTCCACATGAAA
TGGGAGACTTTGCAGTGCTCTTAAGCTCAGGACTCTCTGTCAGGACTGCCATCCTGATGAATTTTCTAAG
TGCCCTGACGGCCTTCGCAGGACTGTACATTGGTCTCTCAGTATCTGCTGACCCACGTGTCCAAGACTGG
ATTTTAACAGTGACTGCTGGGATGTTCTTATATTTATCTTTGGTGGGGATGCTTCCTGAAATGACTCATG
TTCAGACACAACGACCCTGGATGACGTTTCTCCTGCAGAATGTCGGATTGGTCCTTGGCTGGTTTTCTCT
TTTGCTCTTAGCTGTATATGAACAGAATATTAAAATATAA

Translation (689 aa):
MCFWTNLSVWMILLSHSLSLVSSTETGKTLTQNNSRAGSQGLLEVLRVLSAGDHWSLNHPQSLIKILLER
TGCPQRTDWTQGDCKLCLEADALLLTAGGNLEDELREEVVQRVSLLLLYYIIHQEEICSSKLNMSNREYE
FYLHSLLGLRQDEDSYFLSEKETDDILAFTRKYFGTSSSQCMETKILQRESGIQGSNGADEKTLPQLAAT
IIALSLQGVCLGRKALPSPDDFTEYIFSFLNSTNTLHLSEIEQLLNMLTTRRTCAKEDKYLHQYQRKQNT
EEHSLRDPKTSTAMDKESDDHSPSWDQACFSARQLVEIFLQNHSSLSISKEDFKQLSPGIIQQLLSCSCQ
MPKDQQAKPPPTTLEKYGYSTVAVTLLTLGSMLGTALVLFHSCEENYSLILQLFVGLAVGTLSGDALLHL
IPQVLGLHKQEAEFGHFHESQSPIWKLLGLLGGIHGFFLIEKCFILLVSPNTKGLPLVNEHVGHTHHLGL
NPELNDQSSGGKSISTIQLKGPEDSQTTVLPIGNVPASNRNGKTISLLAIMILVGDSLHNFADGLVIGTA
FSSSLESGVTTTIAILCHEIPHEMGDFAVLLSSGLSVRTAILMNFLSALTAFAGLYIGLSVSADPRVQDW
ILTVTAGMFLYLSLVGMLPEMTHVQTQRPWMTFLLQNVGLVLGWFSLLLLAVYEQNIKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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