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Report for CCDS15779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15779.1 Public Mus musculus 2 Traf2 23 108 98 CCDS HistoryNCBI Gene:22030Re-query CCDS DB by CCDS ID:15779.1Re-query CCDS DB by GeneID:22030See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028311.12 ENSMUSP00000028311.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028311.12Link to Ensembl Protein Viewer:ENSMUSP00000028311.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028311Re-query CCDS DB by Protein ID:ENSMUSP00000028311
Original member Current member NCBI NM_009422.3 NP_033448.2 Accepted alive Link to Nucleotide Sequence:NM_009422.3Link to Protein Sequence:NP_033448.2Re-query CCDS DB by Nucleotide ID:NM_009422Re-query CCDS DB by Protein ID:NP_033448Link to BLAST:NP_033448.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033448.2 501 P39429-1 501 100% 0 0

Chromosomal Locations for CCDS 15779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25519410 25519628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25520328 25520476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25524340 25524517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25524867 25525148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25527474 25527548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25528232 25528306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25530287 25530448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25536676 25536774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25537071 25537149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25538866 25539053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGCTGCAGCCAGTGTGACTTCCCCTGGCTCCCTAGAACTGCTACAGCCTGGCTTCTCCAAGACCCTCC
TGGGGACCAGGTTAGAAGCCAAGTACCTCTGTTCAGCCTGCAAAAACATCCTGCGGAGGCCTTTCCAGGC
CCAGTGTGGGCACCGCTACTGCTCCTTCTGCCTGACCAGCATCCTCAGCTCTGGGCCCCAGAACTGTGCT
GCCTGTGTCTATGAAGGCCTGTATGAAGAAGGCATTTCTATTTTAGAGAGTAGTTCGGCCTTTCCAGATA
ACGCTGCCCGCAGAGAGGTGGAGAGCCTGCCAGCTGTCTGTCCCAATGATGGATGCACTTGGAAGGGGAC
CTTGAAAGAATACGAGAGCTGCCACGAAGGACTTTGCCCATTCCTGCTGACGGAGTGTCCTGCATGTAAA
GGCCTGGTCCGCCTCAGCGAGAAGGAGCACCACACTGAGCAGGAATGCCCCAAAAGGAGCCTGAGCTGCC
AGCACTGCAGAGCACCCTGTAGCCACGTGGACCTGGAGGTACACTATGAGGTCTGCCCCAAGTTTCCCTT
AACCTGTGATGGCTGTGGCAAGAAGAAGATCCCTCGGGAGACGTTTCAGGACCATGTTAGAGCATGCAGC
AAATGCCGGGTTCTCTGCAGATTCCACACCGTTGGCTGTTCAGAGATGGTGGAGACTGAGAACCTGCAGG
ATCATGAGCTGCAGCGGCTACGGGAACACCTAGCCCTACTGCTGAGCTCATTCTTGGAGGCCCAAGCCTC
TCCAGGAACCTTGAACCAGGTGGGGCCAGAGCTACTCCAGCGGTGCCAGATTTTGGAGCAGAAGATAGCA
ACCTTTGAGAACATTGTCTGCGTCTTGAACCGTGAAGTAGAGAGGGTAGCAGTGACTGCAGAGGCTTGTA
GCCGGCAGCACCGGCTAGACCAGGACAAGATTGAGGCCCTGAGTAACAAGGTGCAACAGCTGGAGAGGAG
CATCGGCCTCAAGGACCTGGCCATGGCTGACCTGGAGCAGAAGGTCTCCGAGTTGGAAGTATCCACCTAT
GATGGGGTCTTCATCTGGAAGATCTCTGACTTCACCAGAAAGCGTCAGGAAGCCGTAGCTGGCCGGACAC
CAGCTATCTTCTCCCCAGCCTTCTACACAAGCAGATATGGCTACAAGATGTGTCTACGAGTCTACTTGAA
TGGCGACGGCACTGGGCGGGGAACTCATCTGTCTCTCTTCTTCGTGGTGATGAAAGGCCCCAATGATGCT
CTGTTGCAGTGGCCTTTTAATCAGAAGGTAACATTGATGTTGCTGGACCATAACAACCGGGAGCATGTGA
TCGACGCATTCAGGCCCGATGTAACCTCGTCCTCCTTCCAGAGGCCTGTCAGTGACATGAACATCGCCAG
TGGCTGCCCCCTCTTCTGCCCTGTGTCCAAGATGGAGGCCAAGAATTCCTATGTGCGGGATGATGCGATC
TTCATCAAAGCTATTGTGGACCTAACAGGACTCTAG

Translation (501 aa):
MAAASVTSPGSLELLQPGFSKTLLGTRLEAKYLCSACKNILRRPFQAQCGHRYCSFCLTSILSSGPQNCA
ACVYEGLYEEGISILESSSAFPDNAARREVESLPAVCPNDGCTWKGTLKEYESCHEGLCPFLLTECPACK
GLVRLSEKEHHTEQECPKRSLSCQHCRAPCSHVDLEVHYEVCPKFPLTCDGCGKKKIPRETFQDHVRACS
KCRVLCRFHTVGCSEMVETENLQDHELQRLREHLALLLSSFLEAQASPGTLNQVGPELLQRCQILEQKIA
TFENIVCVLNREVERVAVTAEACSRQHRLDQDKIEALSNKVQQLERSIGLKDLAMADLEQKVSELEVSTY
DGVFIWKISDFTRKRQEAVAGRTPAIFSPAFYTSRYGYKMCLRVYLNGDGTGRGTHLSLFFVVMKGPNDA
LLQWPFNQKVTLMLLDHNNREHVIDAFRPDVTSSSFQRPVSDMNIASGCPLFCPVSKMEAKNSYVRDDAI
FIKAIVDLTGL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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