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Report for CCDS1600.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1600.1 Public Homo sapiens 1 SLC35F3 24 110 108 CCDS HistoryNCBI Gene:148641Re-query CCDS DB by CCDS ID:1600.1Re-query CCDS DB by GeneID:148641See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1600.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366618.8 ENSP00000355577.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366618.8Link to Ensembl Protein Viewer:ENSP00000355577.3Re-query CCDS DB by Nucleotide ID:ENST00000366618Re-query CCDS DB by Protein ID:ENSP00000355577
Original member Current member NCBI NM_173508.4 NP_775779.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173508.4Link to Protein Sequence:NP_775779.1Re-query CCDS DB by Nucleotide ID:NM_173508Re-query CCDS DB by Protein ID:NP_775779Link to BLAST:NP_775779.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775779.1 490 Q8IY50-2 490 100% 0 0

Chromosomal Locations for CCDS 1600.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 233905078 233905130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 233905529 233905758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 234231417 234231741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 234309101 234309320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 234316602 234316727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 234318751 234318943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 234320098 234320187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 234323008 234323243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGGGATTCGAGAGTTTCCCAGCGGCGCACCCAGGGGCAAGAGCATTGCCGTTGGCATGAGGAGGTCAC
CGGACGTCAGCCCCCGGAGACTGTCCGACATCAGCCCCCAGCTCCGGCAGCTCAAGTACTTGGTGGTGGA
CGAGGCGATTAAGGAGGATCTGAAATGGTCGCGCTCCGTGGAGGATCTCACCAGCGGGCCGGTGGGGCTC
ACGTCCATCGAGGAGCGGATCCTGCGCATCACTGGCTACTATGGCTACCAGCCCTGGGCAGCGAGCTGCA
AAAGGGAGGAGCGCCCCCGGGACTCCCCGGGCCCGGCGGAGGCCCAGGCACCGGCCGGGGTGGAGGCCGG
CGGGAGAGCGAGTCGCCGCTGCTGGACGTGCTCCCGGGCGCAACTCAAGAAGATCTTCTGGGGCGTGGCG
GTCGTGCTGTGCGTGTGCTCCTCGTGGGCGGGCTCCACGCAGCTCGCCAAGCTGACCTTCAGGAAGTTCG
ACGCGCCCTTCACCCTCACGTGGTTTGCCACCAACTGGAACTTTTTATTCTTCCCGTTGTACTACGTGGG
GCACGTCTGCAAGTCCACAGAGAAGCAGTCTGTGAAGCAGCGATACAGGGAATGCTGTCGATTTTTTGGA
GACAATGGCTTGACTTTGAAGGTGTTTTTTACCAAGGCAGCACCCTTTGGTGTTCTTTGGACACTCACAA
ACTACCTGTACTTACATGCAATAAAGAAAATAAACACTACGGATGTCTCCGTGTTGTTCTGCTGCAACAA
AGCTTTTGTGTTCTTGCTCTCATGGATCGTTCTCAGGGACAGATTCATGGGAGTGAGGATTGTGGCCGCC
ATCCTCGCCATCGCTGGCATTGTGATGATGACCTACGCTGATGGCTTCCACAGCCACTCCGTCATCGGCA
TCGCACTGGTGGTGGCCTCAGCATCGATGTCTGCCCTCTACAAGGTTTTGTTCAAGCTCCTCCTGGGCAG
TGCTAAGTTTGGAGAAGCCGCCTTATTTTTGTCCATCTTGGGTGTGTTTAACATCCTCTTCATCACCTGC
ATTCCTATTATCCTCTACTTTACCAAAGTGGAATACTGGAGCTCTTTTGATGACATTCCATGGGGAAACC
TTTGTGGATTTTCAGTTCTTTTATTGACATTCAATATTGTATTAAATTTTGGAATTGCCGTTACATATCC
CACTCTGATGTCTCTTGGAATCGTCCTCAGCATACCTGTGAATGCAGTGATTGATCACTACACCAGTCAG
ATCGTCTTCAATGGGGTCCGGGTCATCGCCATCATCATCATCGGCCTGGGTTTTCTCCTCCTGCTCCTGC
CAGAGGAGTGGGATGTCTGGTTGATCAAGCTGCTCACCCGACTCAAAGTGAGGAAGAAGGAGGAGCCTGC
AGAGGGCGCTGCCGACCTGAGCTCAGGACCTCAGAGCAAGAACAGAAGAGCCCGCCCTTCCTTCGCCCGC
TAA

Translation (490 aa):
MGIREFPSGAPRGKSIAVGMRRSPDVSPRRLSDISPQLRQLKYLVVDEAIKEDLKWSRSVEDLTSGPVGL
TSIEERILRITGYYGYQPWAASCKREERPRDSPGPAEAQAPAGVEAGGRASRRCWTCSRAQLKKIFWGVA
VVLCVCSSWAGSTQLAKLTFRKFDAPFTLTWFATNWNFLFFPLYYVGHVCKSTEKQSVKQRYRECCRFFG
DNGLTLKVFFTKAAPFGVLWTLTNYLYLHAIKKINTTDVSVLFCCNKAFVFLLSWIVLRDRFMGVRIVAA
ILAIAGIVMMTYADGFHSHSVIGIALVVASASMSALYKVLFKLLLGSAKFGEAALFLSILGVFNILFITC
IPIILYFTKVEYWSSFDDIPWGNLCGFSVLLLTFNIVLNFGIAVTYPTLMSLGIVLSIPVNAVIDHYTSQ
IVFNGVRVIAIIIIGLGFLLLLLPEEWDVWLIKLLTRLKVRKKEEPAEGAADLSSGPQSKNRRARPSFAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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