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Report for CCDS1625.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1625.1 Public Homo sapiens 1 CATSPERE 24 110 108 CCDS HistoryNCBI Gene:257044Re-query CCDS DB by CCDS ID:1625.1Re-query CCDS DB by GeneID:257044See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1625.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366533.8 ENSP00000355491.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366533.8Link to Ensembl Protein Viewer:ENSP00000355491.4Re-query CCDS DB by Nucleotide ID:ENST00000366533Re-query CCDS DB by Protein ID:ENSP00000355491
Original member Current member NCBI NM_173807.5 NP_776168.1 Accepted alive Link to Nucleotide Sequence:NM_173807.5Link to Protein Sequence:NP_776168.1Re-query CCDS DB by Nucleotide ID:NM_173807Re-query CCDS DB by Protein ID:NP_776168Link to BLAST:NP_776168.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776168.1 832 Q5SY80-2 832 100% 0 0

Chromosomal Locations for CCDS 1625.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 244461430 244461494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244463908 244463956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244477541 244477614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244477906 244477975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244479717 244479784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244490447 244490471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244499002 244499079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244518592 244518698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244552322 244552814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244560668 244561145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244572330 244572772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244581796 244581854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244583864 244583939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244588482 244588534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244591681 244591731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244593395 244593428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244593499 244593578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244605695 244605794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244610240 244610326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244635489 244635497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2499 nt):
ATGTCAGCCCGGGAAGTGGCCGTGCTGCTGCTGTGGCTGAGCTGCTATGGCTCCGCCCTTTGGAGGTATT
CCACTAACAGCCCAAACTATCGCATTTTTAGTACCAGAAGTACTATTAAGTTAGAGTATGAAGGAACATT
ATTTACTGAGTGGAGTGTGCCAGAAACTTGTTTTGTGCTAAATAAAAGCTCACCCACGACAGAATTGCGT
TGTTCCTCACCTGGTGTTCACGCTATAAAACCAATTGTTACTGGCCCAGATGAAGAAGAACGCTATTTAT
TTGTGGAAAGTTCTCATACTTGCTTTCTGTGGTACTATAGAGTTAGACATTTCTTTAACAACTTTACCCA
GCTTATCACTGTGTGGGCATATGATCCAGAAAGTGCAGATCCTGATGAGTTGCTGGGGAATGCAGAAGAA
CCTTCAATAAATTCCATAGTACTCAGCACACAGATGGCCACATTGGGACAGAAGCCTGTCATACATACAG
TTCTGAAGAGAAAAGTTTATTCTTCAAATGAGAAAATGAGAAGGGGGACCTGGCGTATTGTAGTACCAAT
GACAAAAGATGATGCACTAAAGGAGATTAGAGGAAACCAAGTTACTTTTCAGGATTGCTTTATTGCAGAT
TTTCTTATTCTGTTGACTTTTCCTTTGTTGACCATACCTGAAATTCCTGGTTATTTACCAATCTCCTCAC
CACGTGGTAGTCAATTAATGGCTTCCTGGGATGCTTGTGTAGTTGCATCTGCTGTTTTGGTGACAGATAT
GGAGACCTTTCACACAACTGATTCATTCAAATCTTGGACCAGAATCAGAGTGCCTCCAGACATTCTGAGT
GATGATGAAAGACGGAGTGTGGCTCATGTGATCTTATCGCGGGATGGAATCGTTTTTCTTATAAATGGTG
TTCTTTACATAAAGAGTTTTCGTGGATTTATAAGACTGGGAGGAATTGTAAATCTTCCTGATGGTGGAAT
TACTGGCATTTCATCAAGAAAATGGTGTTGGGTCAATTATTTATTAAAGGCTAAAGGAAGAAGAAGCACC
TTTGCAGTCTGGACAGAAAATGAAATTTACCTCGGATCCATTCTTCTTAAGTTTGCCAGATTAGTAACTA
CCACAGAACTGAAAAACATCCTAAGTCTATCGGTGACTGCTACTCTGACCATAGACAGGGTTGAGTATAC
AGGACACCCTCTGGAGATTGCTGTGTTTTTAAATTATTGCACTGTATGTAACGTCACCAAAAAGATTTTC
TTAGTGATATATAATGAAGATACAAAACAGTGGGTTTCCCAAGACTTTACATTAGATGCCCCTATTGACA
GTGTTACCATGCCACATTTTACATTTTCAGCACTGCCAGGATTACTGCTATGGAACAAGCATAGTATCTA
CTATTGTTACCATAATTTCACCTTTACTGGGATTTTACAGACACCTGCAGGACATGGAAATCTATCAATG
CTATCAAATGACAGCATTATTCATGAAGTTTTCATAGATTATTATGGAGATATTTTGGTAAAAATGGAAA
ATAATGTAATATTTTATTCCAAGATTAATACTAGAGATGCAGTAAAGCTGCATTTATGGACAAATTACAC
AACAAGAGCATTCATTTTCTTAAGTACATCTGGTCAAACATATTTCCTGTATGCTTTGGATGATGGCACA
ATACAAATACAGGACTATCCCTTACATCTGGAAGCACAAAGTATAGCTTTCACAACAAAAGACAAATGCC
CATACATGGCATTTCATAACAATGTTGCTCATGTTTTTTACTTTTTGGACAAGGGAGAGGCTCTGACAGT
TTGGACTCAGATCGTCTATCCAGAAAACACTGGTCTGTATGTTATTGTGGAATCTTATGGCCCAAAAATA
TTACAAGAGAGTCATGAGATTTCCTTTGAAGCTGCCTTTGGATACTGCACCAAAACTCTGACACTAACAT
TTTATCAGAATGTAGATTATGAGAGAATATCTGATTACTTTGAGACACAAGACAAGCACACGGGTCTTGT
GCTGGTTCAGTTTCGACCTAGTGAATATTCAAAAGCATGTCCAATAGCCCAAAAGGTGTTCCAAATAGCT
GTTGGCTGTGATGATAAAAAATTCATTGCAATTAAAGGATTTAGTAAAAAAGGATGTCATCACCATGATT
TTTCATACGTGATTGAAAAGTCATATCTGAGGCATCAGCCATCGAAAAACTTGAGAGTAAGGTATATTTG
GGGAGAATATGGCTGCCCTCTGAGGCTTGACTTCACAGAAAAGTTTCAACCTGTGGTTCAACTATTTGAT
GATAATGGCTATGTTAAAGACGTTGAAGCAAATTTCATAGTGTGGGAAATACACGGCAGGGATGACTATA
GCTTTAATAATACTATGGCACAGAGTGGTTGTTTACATGAAGCACAGACATGGAAGTCAATGATTGAACT
TAACAAGCACCTCCCACTAGAAGAAGTCTGGGGACCTGAGTTTCTGTAA

Translation (832 aa):
MSAREVAVLLLWLSCYGSALWRYSTNSPNYRIFSTRSTIKLEYEGTLFTEWSVPETCFVLNKSSPTTELR
CSSPGVHAIKPIVTGPDEEERYLFVESSHTCFLWYYRVRHFFNNFTQLITVWAYDPESADPDELLGNAEE
PSINSIVLSTQMATLGQKPVIHTVLKRKVYSSNEKMRRGTWRIVVPMTKDDALKEIRGNQVTFQDCFIAD
FLILLTFPLLTIPEIPGYLPISSPRGSQLMASWDACVVASAVLVTDMETFHTTDSFKSWTRIRVPPDILS
DDERRSVAHVILSRDGIVFLINGVLYIKSFRGFIRLGGIVNLPDGGITGISSRKWCWVNYLLKAKGRRST
FAVWTENEIYLGSILLKFARLVTTTELKNILSLSVTATLTIDRVEYTGHPLEIAVFLNYCTVCNVTKKIF
LVIYNEDTKQWVSQDFTLDAPIDSVTMPHFTFSALPGLLLWNKHSIYYCYHNFTFTGILQTPAGHGNLSM
LSNDSIIHEVFIDYYGDILVKMENNVIFYSKINTRDAVKLHLWTNYTTRAFIFLSTSGQTYFLYALDDGT
IQIQDYPLHLEAQSIAFTTKDKCPYMAFHNNVAHVFYFLDKGEALTVWTQIVYPENTGLYVIVESYGPKI
LQESHEISFEAAFGYCTKTLTLTFYQNVDYERISDYFETQDKHTGLVLVQFRPSEYSKACPIAQKVFQIA
VGCDDKKFIAIKGFSKKGCHHHDFSYVIEKSYLRHQPSKNLRVRYIWGEYGCPLRLDFTEKFQPVVQLFD
DNGYVKDVEANFIVWEIHGRDDYSFNNTMAQSGCLHEAQTWKSMIELNKHLPLEEVWGPEFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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