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Report for CCDS16690.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16690.1 Public Mus musculus 2 Sppl2a 23 108 98 CCDS HistoryNCBI Gene:66552Re-query CCDS DB by CCDS ID:16690.1Re-query CCDS DB by GeneID:66552See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16690.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028844.10 ENSMUSP00000028844.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028844.10Link to Ensembl Protein Viewer:ENSMUSP00000028844.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028844Re-query CCDS DB by Protein ID:ENSMUSP00000028844
Original member Current member NCBI NM_023220.2 NP_075709.2 Accepted alive Link to Nucleotide Sequence:NM_023220.2Link to Protein Sequence:NP_075709.2Re-query CCDS DB by Nucleotide ID:NM_023220Re-query CCDS DB by Protein ID:NP_075709Link to BLAST:NP_075709.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075709.2 523 Q9JJF9 523 100% 0 0

Chromosomal Locations for CCDS 16690.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 126894212 126894286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126904910 126905070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126908106 126908180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126912643 126912745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126913532 126913588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126917211 126917285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126917800 126917881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126919639 126919740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126920318 126920414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126923456 126923607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126925746 126925879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126926288 126926377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126926817 126926999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126927749 126927868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126932947 126933012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGGGGCTGCTGCACTCGCTGCACGCTCCCGCGGCTGCCCTGCTCTGGAGCTGCCTGCTCGGACTGGCAG
CTGCTCAGGAAGCCATTCTGCATGCGTCTACAAATGGCGTGTCTTCACTTTCCAAGGACTACTGCATGTA
TTATAACAACAACTGGACACGACTTCCAAGTTCCCTAGAAAATGCAACTTCTCTGAGCTTGATGAATCTG
ACGGGCACAGCACTGTGCCACCTTTCTGATATTCCTCCTGATGGCATAAGGAACAAGGCAGTGGTGGTGC
ACTGGGGACCCTGCCATTTTCTTGAAAAAGCCAGAATTGCACAGGAAGGTGGTGCTGCAGCATTGCTGAT
TGCCAACAACAGTGTCCTAATTCCTTCCTCAAGGAACAAATCTACATTTCAAAATGTGACTGTACTAATT
GCAGTTATAACCCAAAAAGACTTCAAAGACATGAAAGAGACTCTTGGAGATGACATTACCGTGAAAATGT
ATTCCCCATCCTGGCCTAACTTTGACTATACTCTGGTGGTTATTTTTGTAATTGCTGTGTTCACTGTGGC
CTTAGGAGGATACTGGAGTGGACTTATTGAATTGGAAAACATGAAGTCAGTGGAAGACGCAGAAGACAGA
GAGACAAGAAAAAAGAAGGACGATTACTTAACATTCAGTCCTCTCACGGTTGTTGTGTTCGTGGTCATCT
GCTGTATAATGATTGTCTTACTGTATTTCTTCTACAGGTGGCTTGTGTATGTTATGATAGCGATTTTCTG
CATAGCATCGTCAATGAGCCTGTACAACTGTCTTTCTGCATTGATTCATAGGATGCCATGTGGACAGTGC
ACGATTTTGTGTTGTGGCAAAAACATTAAAGTGAGCCTGATTTTCCTTTCCGGGCTGTGCATCTCAGTTG
CTGTTGTGTGGGCTGTATTTCGAAATGAGGATAGGTGGGCTTGGATTTTACAGGATATCTTAGGAATTGC
TTTCTGTCTCAACTTAATTAAAACAATGAAGTTACCCAATTTCATGTCATGCGTGATACTGCTAGGCCTT
CTTCTCATCTACGATGTGTTCTTTGTCTTCATCACACCTTTCATCACAAAGAATGGTGAGAGCATCATGG
TGGAACTTGCTGCTGGGCCTTTCGAGAATGCTGAAAAGTTGCCAGTAGTTATCAGGGTGCCAAAACTGAT
GGGTTACTCAGTCATGAGTGTATGCTCCGTGCCTGTTTCAGTATTGGGTTTCGGAGATATCATTGTACCA
GGCCTGTTGATTGCATATTGTAGAAGATTCGATGTTCAGACTGGTTCTTCTATATACTATATTTCATCCA
CAATTGCCTATGCTGTTGGCATGATCATTACCTTTGTTGTCCTGATGGTGATGAAAACAGGGCAGCCTGC
TCTCCTCTACTTGGTACCTTGTACACTTATTACTGTCTCAGTCGTTGCTTGGAGTCGTAAGGAAATGAAA
AAGTTCTGGAAAGGCAGCAGCTATCAGGTGATGGACCACCTGGACTATTCAACAAATGAAGAAAATCCAG
TGACGACTGATGAGCAGATTGTACAACAGTAA

Translation (523 aa):
MGLLHSLHAPAAALLWSCLLGLAAAQEAILHASTNGVSSLSKDYCMYYNNNWTRLPSSLENATSLSLMNL
TGTALCHLSDIPPDGIRNKAVVVHWGPCHFLEKARIAQEGGAAALLIANNSVLIPSSRNKSTFQNVTVLI
AVITQKDFKDMKETLGDDITVKMYSPSWPNFDYTLVVIFVIAVFTVALGGYWSGLIELENMKSVEDAEDR
ETRKKKDDYLTFSPLTVVVFVVICCIMIVLLYFFYRWLVYVMIAIFCIASSMSLYNCLSALIHRMPCGQC
TILCCGKNIKVSLIFLSGLCISVAVVWAVFRNEDRWAWILQDILGIAFCLNLIKTMKLPNFMSCVILLGL
LLIYDVFFVFITPFITKNGESIMVELAAGPFENAEKLPVVIRVPKLMGYSVMSVCSVPVSVLGFGDIIVP
GLLIAYCRRFDVQTGSSIYYISSTIAYAVGMIITFVVLMVMKTGQPALLYLVPCTLITVSVVAWSRKEMK
KFWKGSSYQVMDHLDYSTNEENPVTTDEQIVQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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