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Report for CCDS1679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1679.1 Public Homo sapiens 2 SLC66A3 24 110 108 CCDS HistoryNCBI Gene:130814Re-query CCDS DB by CCDS ID:1679.1Re-query CCDS DB by GeneID:130814See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1679.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295083.8 ENSP00000295083.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295083.8Link to Ensembl Protein Viewer:ENSP00000295083.3Re-query CCDS DB by Nucleotide ID:ENST00000295083Re-query CCDS DB by Protein ID:ENSP00000295083
Original member Current member NCBI NM_152391.5 NP_689604.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152391.5Link to Protein Sequence:NP_689604.1Re-query CCDS DB by Nucleotide ID:NM_152391Re-query CCDS DB by Protein ID:NP_689604Link to BLAST:NP_689604.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689604.1 202 Q8N755-1 202 100% 0 0

Chromosomal Locations for CCDS 1679.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 11155547 11155689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11160466 11160548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11160625 11160694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11164204 11164261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11171925 11172045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11174968 11175009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11177737 11177828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGGAGGCGGCGCTGCTGGGGCTGTGTAACTGGAGCACGCTGGGCGTGTGCGCCGCGCTGAAGCTGCCGC
AGATCTCCGCTGTGCTAGCGGCGCGCAGCGCGCGGGGCCTCAGCCTTCCGAGTTTACTTCTGGAGCTGGC
AGGATTCCTGGTGTTTCTGCGGTACCAGTGTTACTATGGGTATCCGCCGCTGACCTACCTGGAGTACCCC
ATCCTCATCGCGCAAGATGTCATCCTCCTGCTCTGTATCTTTCATTTTAACGGGAACGTGAAGCAGGCCA
CTCCTTACATCGCTGTATTGGTGTCTTCTTGGTTCATCCTTGCCCTGCAGAAGTGGATCATAGACCTGGC
CATGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTTTGCACAGCTCCAGTGTCTGTGGAAGACGAGA
GACTCAGGAACTGTGAGTGCGCTGACTTGGAGCCTCTCTTCCTATACCTGTGCAACAAGAATAATCACAA
CCTTAATGACCACCAATGATTTTACAATTCTTCTACGTTTTGTGATCATGCTGGCTTTAAATATATGGGT
AACAGTGACAGTACTTCGCTACCGGAAGACCGCTATAAAGGCTGAATGA

Translation (202 aa):
MEAALLGLCNWSTLGVCAALKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYLEYP
ILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWFILALQKWIIDLAMNLCTFISAASKFAQLQCLWKTR
DSGTVSALTWSLSSYTCATRIITTLMTTNDFTILLRFVIMLALNIWVTVTVLRYRKTAIKAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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