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Report for CCDS1684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1684.1 Public Homo sapiens 2 LRATD1 24 110 108 CCDS HistoryNCBI Gene:151354Re-query CCDS DB by CCDS ID:1684.1Re-query CCDS DB by GeneID:151354See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1684.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295092.3 ENSP00000295092.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295092.3Link to Ensembl Protein Viewer:ENSP00000295092.2Re-query CCDS DB by Nucleotide ID:ENST00000295092Re-query CCDS DB by Protein ID:ENSP00000295092
Original member Current member EBI ENST00000331243.4 ENSP00000330681.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000331243.4Link to Ensembl Protein Viewer:ENSP00000330681.4Re-query CCDS DB by Nucleotide ID:ENST00000331243Re-query CCDS DB by Protein ID:ENSP00000330681
Original member Current member NCBI NM_001369364.1 NP_001356293.1 Accepted alive Link to Nucleotide Sequence:NM_001369364.1Link to Protein Sequence:NP_001356293.1Re-query CCDS DB by Nucleotide ID:NM_001369364Re-query CCDS DB by Protein ID:NP_001356293Link to BLAST:NP_001356293.1
Original member Current member NCBI NM_145175.4 NP_660158.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145175.4Link to Protein Sequence:NP_660158.2Re-query CCDS DB by Nucleotide ID:NM_145175Re-query CCDS DB by Protein ID:NP_660158Link to BLAST:NP_660158.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356293.1 292 Q96KN4-1 292 100% 0 0
NP_660158.2 292 Q96KN4-1 292 100% 0 0

Chromosomal Locations for CCDS 1684.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 14633980 14634858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGGCAACCAACTGGACCGCATCACCCACCTCAACTACAGCGAGTTGCCCACAGGGGACCCGTCGGGGA
TTGAAAAGGACGAACTGCGGGTCGGGGTTGCCTACTTCTTCTCGGATGATGAGGAAGACCTGGACGAACG
CGGGCAGCCCGACAAGTTTGGCGTGAAGGCCCCCCCGGGTTGCACCCCCTGCCCGGAGAGCCCCAGCCGC
CACCACCACCACCTGCTGCACCAGCTGGTCCTCAACGAGACTCAGTTTTCCGCCTTTCGGGGCCAGGAAT
GCATCTTTTCCAAAGTGAGCGGTGGCCCTCAGGGCGCCGACCTAAGCGTCTACGCGGTCACCGCGCTGCC
AGCGCTCTGCGAACCCGGCGACCTGCTGGAGCTGCTGTGGCTGCAGCCCGCGCCGGAGCCGCCCGCGCCC
GCCCCGCACTGGGCCGTCTACGTGGGCGGCGGGCAGATCATCCACCTGCACCAAGGCGAGATCCGCCAGG
ACAGCCTGTATGAGGCGGGCGCGGCCAACGTGGGCCGGGTGGTGAATAGCTGGTACCGCTACCGCCCGCT
GGTGGCCGAGCTGGTGGTGCAGAACGCCTGCGGCCACCTGGGCCTCAAGAGCGAGGAGATCTGCTGGACG
AACTCGGAGAGCTTCGCCGCCTGGTGCCGCTTTGGCAAGCGGGAGTTCAAGGCGGGAGGGGAGGTGCCGG
CAGGCACGCAGCCCCCGCAGCAGCAGTACTATCTCAAGGTGCACCTGGGAGAGAACAAGGTCCACACCGC
CAGGTTTCACAGCCTGGAAGACCTCATCCGCGAGAAGCGCCGTATCGACGCCAGCGGCCGCCTGCGAGTG
CTCCAGGAGCTCGCCGACCTCGTGGACGACAAGGAGTAG

Translation (292 aa):
MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDDEEDLDERGQPDKFGVKAPPGCTPCPESPSR
HHHHLLHQLVLNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALCEPGDLLELLWLQPAPEPPAP
APHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWT
NSESFAAWCRFGKREFKAGGEVPAGTQPPQQQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRV
LQELADLVDDKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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