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Report for CCDS1697.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1697.1 Public Homo sapiens 2 SDC1 24 110 108 CCDS HistoryNCBI Gene:6382Re-query CCDS DB by CCDS ID:1697.1Re-query CCDS DB by GeneID:6382See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1697.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254351.9 ENSP00000254351.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254351.9Link to Ensembl Protein Viewer:ENSP00000254351.4Re-query CCDS DB by Nucleotide ID:ENST00000254351Re-query CCDS DB by Protein ID:ENSP00000254351
Original member Current member EBI ENST00000381150.5 ENSP00000370542.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381150.5Link to Ensembl Protein Viewer:ENSP00000370542.1Re-query CCDS DB by Nucleotide ID:ENST00000381150Re-query CCDS DB by Protein ID:ENSP00000370542
Original member Current member NCBI NM_001006946.2 NP_001006947.2 Accepted alive Link to Nucleotide Sequence:NM_001006946.2Link to Protein Sequence:NP_001006947.2Re-query CCDS DB by Nucleotide ID:NM_001006946Re-query CCDS DB by Protein ID:NP_001006947Link to BLAST:NP_001006947.2
Original member Current member NCBI NM_002997.5 NP_002988.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002997.5Link to Protein Sequence:NP_002988.4Re-query CCDS DB by Nucleotide ID:NM_002997Re-query CCDS DB by Protein ID:NP_002988Link to BLAST:NP_002988.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001006947.2 310 P18827 310 100% 0 0
NP_002988.4 310 P18827 310 100% 0 0

Chromosomal Locations for CCDS 1697.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 20202766 20202935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20203087 20203222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20203813 20204291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20205343 20205424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20224802 20224867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGAGGCGCGCGGCGCTCTGGCTCTGGCTGTGCGCGCTGGCGCTGAGCCTGCAGCCGGCCCTGCCGCAAA
TT
GTGGCTACTAATTTGCCCCCTGAAGATCAAGATGGCTCTGGGGATGACTCTGACAACTTCTCCGGCTC
A
GGTGCAGGTGCTTTGCAAGATATCACCTTGTCACAGCAGACCCCCTCCACTTGGAAGGACACGCAGCTC
CTG
ACGGCTATTCCCACGTCTCCAGAACCCACCGGCCTGGAGGCTACAGCTGCCTCCACCTCCACCCTGC
CG
GCTGGAGAGGGGCCCAAGGAGGGAGAGGCTGTAGTCCTGCCAGAAGTGGAGCCTGGCCTCACCGCCCG
G
GAGCAGGAGGCCACCCCCCGACCCAGGGAGACCACACAGCTCCCGACCACTCATCTGGCCTCAACGACC
ACA
GCCACCACGGCCCAGGAGCCCGCCACCTCCCACCCCCACAGGGACATGCAGCCTGGCCACCATGAGA
CC
TCAACCCCTGCAGGACCCAGCCAAGCTGACCTTCACACTCCCCACACAGAGGATGGAGGTCCTTCTGC
C
ACCGAGAGGGCTGCTGAGGATGGAGCCTCCAGTCAGCTCCCAGCAGCAGAGGGCTCTGGGGAGCAGGAC
TTC
ACCTTTGAAACCTCGGGGGAGAATACGGCTGTAGTGGCCGTGGAGCCTGACCGCCGGAACCAGTCCC
CA
GTGGATCAGGGGGCCACGGGGGCCTCACAGGGCCTCCTGGACAGGAAAGAGGTGCTGGGAGGGGTCAT
T
GCCGGAGGCCTCGTGGGGCTCATCTTTGCTGTGTGCCTGGTGGGTTTCATGCTGTACCGCATGAAGAAG
AAG
GACGAAGGCAGCTACTCCTTGGAGGAGCCGAAACAAGCCAACGGCGGGGCCTACCAGAAGCCCACCA
AA
CAGGAGGAATTCTATGCCTGA


Translation (310 aa):
MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQTPSTWKDTQL
L
TAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQEATPRPRETTQLPTTHLASTT
T
ATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHTEDGGPSATERAAEDGASSQLPAAEGSGEQ
D
F
TFETSGENTAVVAVEPDRRNQSPVDQGATGASQGLLDRKEVLG
GVIAGGLVGLIFAVCLVGFMLYRMKK
K
DEGSYSLEEPKQANGGAYQKPTKQEEFYA




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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