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Report for CCDS17004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17004.1 Public Mus musculus 2 Sgk2 23 108 98 CCDS HistoryNCBI Gene:27219Re-query CCDS DB by CCDS ID:17004.1Re-query CCDS DB by GeneID:27219See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17004.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018012.13 ENSMUSP00000018012.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018012.13Link to Ensembl Protein Viewer:ENSMUSP00000018012.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000018012Re-query CCDS DB by Protein ID:ENSMUSP00000018012
Original member Current member NCBI NM_013731.3 NP_038759.1 Accepted alive Link to Nucleotide Sequence:NM_013731.3Link to Protein Sequence:NP_038759.1Re-query CCDS DB by Nucleotide ID:NM_013731Re-query CCDS DB by Protein ID:NP_038759Link to BLAST:NP_038759.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038759.1 367 Q9QZS5-1 367 100% 0 0

Chromosomal Locations for CCDS 17004.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 162992965 162993000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162993890 162993939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162994465 162994522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162994670 162994753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162995687 162995818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162997834 162997946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162998230 162998266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162999182 162999268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163003272 163003367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163004147 163004302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163006794 163006883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163012910 163013074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGCCTCCAGCCCAGTTGGAGTTCCTAGCCCACAGCCCTCTAGGGCCAATGGGAACATCAACCTGGGGC
CATCAGCCAACCCAAATGCCCGGCCCACAGACTTTGATTTCCTCAAAGTCATTGGCAAAGGGAACTACGG
GAAGGTCCTACTGGCCAAGCGCAAGTCGGACGGAGCCTTCTACGCCGTGAAGGTGCTGCAGAAGAAATCC
ATTTTAAAGAACAAAGAGCAGAACCACATCATGGCAGAGCGCAACGTGCTGTTGAAGAACGTGCGGCATC
CTTTCCTCGTGGGCCTGCGCTACTCCTTCCAGACCCCAGAGAAACTCTACTTTGTGCTTGACTATGTCAA
CGGGGGAGAGCTCTTCTTCCATCTACAGCGGGAACGCAGGTTCCTGGAGCCCCGGGCCCGGTTCTACACT
GCAGAGGTGGCGAGCGCCATTGGTTACCTTCACTCTCTCAACATCATCTACAGAGACCTGAAGCCAGAAA
ACATTCTCTTGGACTGCCAGGGTCACGTGGTACTGACCGATTTCGGCCTTTGCAAGGAATGTGTAGAGCC
TGAGGAGACCACGTCCACCTTCTGCGGCACCCCTGAGTACTTGGCTCCAGAAGTGCTTCGTAAAGAGCCT
TACGATCGAGCAGTGGACTGGTGGTGCTTAGGGGCAGTCCTCTACGAGATGCTACATGGCCTGCCCCCCT
TCTTCAACACTGACGTGGCCCAGATGTATGAGAATATTTTACATCAGCCGCTACAGATCCCTGGAGGCCG
GACAGTGGCTGCCTGTGACCTCCTGCAAGGCCTTCTCCACAAGGACCAGAGGCAGCGGCTGGGCTCCAAG
GAAGACTTTCTGGACATAAAGAACCACATGTTCTTCAGTCCCATAAACTGGGATGATCTGTACCACAAGA
GGCTGACTCCACCCTTCAACCCAAACGTGGAAGGACCTGCTGACTTGAAACACTTTGACCCAGAGTTCAC
CCAGGAAGCTGTGTCCAAGTCCATTGGCTGCACCCCTGACACCGTGGCCAGCAGTTCTGGGGCTTCAAGT
GCATTCCTTGGATTTTCCTATGCACAGGATGATGATGACATTTTGGACTCTTGA

Translation (367 aa):
MASSPVGVPSPQPSRANGNINLGPSANPNARPTDFDFLKVIGKGNYGKVLLAKRKSDGAFYAVKVLQKKS
ILKNKEQNHIMAERNVLLKNVRHPFLVGLRYSFQTPEKLYFVLDYVNGGELFFHLQRERRFLEPRARFYT
AEVASAIGYLHSLNIIYRDLKPENILLDCQGHVVLTDFGLCKECVEPEETTSTFCGTPEYLAPEVLRKEP
YDRAVDWWCLGAVLYEMLHGLPPFFNTDVAQMYENILHQPLQIPGGRTVAACDLLQGLLHKDQRQRLGSK
EDFLDIKNHMFFSPINWDDLYHKRLTPPFNPNVEGPADLKHFDPEFTQEAVSKSIGCTPDTVASSSGASS
AFLGFSYAQDDDDILDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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