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Report for CCDS17019.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17019.1 Public Mus musculus 2 Ywhab 23 108 98 CCDS HistoryNCBI Gene:54401Re-query CCDS DB by CCDS ID:17019.1Re-query CCDS DB by GeneID:54401See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17019.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018470.9 ENSMUSP00000018470.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018470.9Link to Ensembl Protein Viewer:ENSMUSP00000018470.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000018470Re-query CCDS DB by Protein ID:ENSMUSP00000018470
Original member NCBI NM_018753.6 NP_061223.2 Updated not alive Link to Nucleotide Sequence:NM_018753.6Link to Protein Sequence:NP_061223.2Re-query CCDS DB by Nucleotide ID:NM_018753Re-query CCDS DB by Protein ID:NP_061223
Current member NCBI NM_018753.7 NP_061223.2 Accepted alive Link to Nucleotide Sequence:NM_018753.7Link to Protein Sequence:NP_061223.2Re-query CCDS DB by Nucleotide ID:NM_018753Re-query CCDS DB by Protein ID:NP_061223Link to BLAST:NP_061223.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061223.2 246 Q9CQV8-1 246 100% 0 0

Chromosomal Locations for CCDS 17019.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164011605 164011904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164014006 164014129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164015231 164015394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164016103 164016198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164016669 164016725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGACCATGGATAAGAGTGAGCTGGTACAGAAAGCCAAACTGGCTGAGCAGGCTGAGCGCTATGATGACA
TGGCTGCAGCTATGAAGGCCGTAACAGAGCAGGGACACGAACTCTCCAATGAAGAGAGGAATCTACTCTC
TGTTGCCTACAAGAACGTGGTAGGTGCCCGCCGCTCTTCCTGGCGTGTCATCTCCAGCATCGAACAGAAA
ACCGAGAGGAATGAGAAGAAGCAGCAGATGGGCAAAGAGTACCGTGAGAAGATCGAGGCGGAGCTGCAGG
ACATCTGCAACGATGTGCTGGAGCTGTTGGACAAATATCTCATTCTCAATGCCACCCAGGCAGAAAGCAA
AGTGTTCTACTTAAAAATGAAAGGAGACTACTTTAGGTATCTTTCTGAAGTTGCATCCGGAGAAAATAAA
CAAACCACGGTGTCCAACTCCCAGCAGGCTTACCAAGAAGCATTTGAAATCAGCAAGAAAGAAATGCAGC
CTACACACCCGATTCGCCTCGGCCTGGCGCTGAATTTCTCAGTCTTTTACTATGAGATTCTAAACTCTCC
TGAAAAGGCCTGCAGCCTGGCCAAAACGGCATTTGATGAGGCGATTGCTGAGTTGGACACCCTGAATGAA
GAGTCTTACAAAGACAGCACCCTGATCATGCAGCTGCTCAGGGACAATCTCACCCTGTGGACGTCAGAAA
ACCAGGGGGATGAAGGAGATGCTGGAGAGGGAGAGAACTAA

Translation (246 aa):
MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRVISSIEQK
TERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLILNATQAESKVFYLKMKGDYFRYLSEVASGENK
QTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNE
ESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGEGEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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