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Report for CCDS17453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17453.1 Public Mus musculus 3 Etv3 23 108 98 CCDS HistoryNCBI Gene:27049Re-query CCDS DB by CCDS ID:17453.1Re-query CCDS DB by GeneID:27049See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17453.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119109.7 ENSMUSP00000112915.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119109.7Link to Ensembl Protein Viewer:ENSMUSP00000112915.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119109Re-query CCDS DB by Protein ID:ENSMUSP00000112915
Original member Current member EBI ENSMUST00000170036.7 ENSMUSP00000127419.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170036.7Link to Ensembl Protein Viewer:ENSMUSP00000127419.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170036Re-query CCDS DB by Protein ID:ENSMUSP00000127419
Original member NCBI NM_001083318.2 NP_001076787.1 Updated not alive Link to Nucleotide Sequence:NM_001083318.2Link to Protein Sequence:NP_001076787.1Re-query CCDS DB by Nucleotide ID:NM_001083318Re-query CCDS DB by Protein ID:NP_001076787
Current member NCBI NM_001083318.3 NP_001076787.1 Accepted alive Link to Nucleotide Sequence:NM_001083318.3Link to Protein Sequence:NP_001076787.1Re-query CCDS DB by Nucleotide ID:NM_001083318Re-query CCDS DB by Protein ID:NP_001076787Link to BLAST:NP_001076787.1
Original member NCBI NM_001286844.1 NP_001273773.1 Updated not alive Link to Nucleotide Sequence:NM_001286844.1Link to Protein Sequence:NP_001273773.1Re-query CCDS DB by Nucleotide ID:NM_001286844Re-query CCDS DB by Protein ID:NP_001273773
Current member NCBI NM_001286844.2 NP_001273773.1 Accepted alive Link to Nucleotide Sequence:NM_001286844.2Link to Protein Sequence:NP_001273773.1Re-query CCDS DB by Nucleotide ID:NM_001286844Re-query CCDS DB by Protein ID:NP_001273773Link to BLAST:NP_001273773.1
Original member NCBI NM_012051.4 NP_036181.3 Updated not alive Link to Nucleotide Sequence:NM_012051.4Link to Protein Sequence:NP_036181.3Re-query CCDS DB by Nucleotide ID:NM_012051Re-query CCDS DB by Protein ID:NP_036181
Current member NCBI NM_012051.5 NP_036181.3 Accepted alive Link to Nucleotide Sequence:NM_012051.5Link to Protein Sequence:NP_036181.3Re-query CCDS DB by Nucleotide ID:NM_012051Re-query CCDS DB by Protein ID:NP_036181Link to BLAST:NP_036181.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076787.1 513 Q8R4Z4 513 100% 0 0
NP_001273773.1 513 Q8R4Z4 513 100% 0 0
NP_036181.3 513 Q8R4Z4 513 100% 0 0

Chromosomal Locations for CCDS 17453.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87527271 87527316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87527870 87528107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87529224 87529339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87535511 87536652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGAAAGCAGGCTGTAGCATCGTGGAAAAGCCAGAAGGAGGTGGAGGGTATCAGTTTCCGGATTGGGCCT
ACAAAGCCGAGTCGTCGCCGGGCTCCCGGCAGATCCAGCTGTGGCACTTCATCCTGGAACTGCTGCAGAA
GGAAGAGTTCCGCCATGTCATCGCCTGGCAGCAGGGAGAGTACGGGGAGTTTGTCATCAAGGATCCAGAT
GAAGTGGCTCGCCTCTGGGGCCGCAGGAAGTGCAAACCACAGATGAACTATGACAAGCTGAGCCGGGCCC
TCAGATACTATTACAACAAGAGGATCCTTCATAAAACAAAAGGGAAAAGGTTTACTTACAAGTTTAACTT
CAACAAGCTCGTGATGCCCAACTACCCGTTCATCAACATTCGCTCGAGTGGTGTGGTTCCTCAGAGTGCG
CCACCAGTGCCAACAGCCTCCTCCCGGTTCCATTTCCCACCTCTAGACAGCCATTCTCCTACTGGCGATG
TGCAACCGGGTCGCTTCTCTGCCAGCTCACTGAGTGCTTCTGGCCCTGAGTCAGGGGTTACCACTGACAG
GAAGGTCGAGCCTTCGGACCTGGAAGATGGCTCGGCCTCTGACTGGCACCGGGGCATGGACTTCATGCCC
TCCCGAAATGCTCTGGGCGGAGGAGCAGTCGGCCACCAGAAACGCAAGCCTGACATACTGCTTCCTCTCT
TCACCCGGCCAGCCATGTACCCTGACCCGCACAGTCCCTTCGCTATCTCTCCGGTCCCTGGCCGCGGAGG
GGTCCTTAATGTCCCCATCTCACCAGCCCTGTCCCTGACTCCCACCATGTTCTCCTACAGTCCCTCACCA
GGCCTGAGCCCCTTCACCAGCAGCAGTTGCTTCTCCTTCAACCCAGAGGAAATGAAACACTACCTTCATT
CTCAAGCCTGTTCGGTGTTCAACTACCATCTGAGTCCCCGGACTTTCCCCCGTTACCCAGGGCTCATGGT
CCCACCGCTGCAGTGCCAAATGCATCCTGAGGAGCCTTCCCAGTTCTCCATCAAGCTGCAGCCCCCGCCG
GCTGGACGGAAGAACCGCGAGAGGGTAGAGAGCCGGGAGGAGGCTGTTCGCGGCTCTGTGCCCGCCAGCG
CTCCTGTTCCCTCTCGGATTAAGGTAGAGCCGGCCACAGAGAAGGATCCTGACAGCCTCCGGCAGTCAAC
CCAGGGAAAGGAGGAACAGACCCAAGAAGTGGACAGCATGCGGAGCAGGACCATAGAAGAGGGGAAAGGC
ACCGGGTTTGCCCACCCCTCACCCACCTGGCCCTCTGTGTCCATTAGCACTCCCAGTGACGAACCCCTAG
AGGGGACCGAAGACAGTGAGGACAGGTCTGTCAGGGAGCCCGGTGTACCCGAGAAGAAAGAAGACGCCCT
GATGCCCCCTAAGCTTCGGCTGAAGAGGCGGTGGAATGACGACCCTGAAGCCAGGGAGCTCAACAAAACG
GGCAAGTTCCTCTGGAATGGGGCAGGACCCCAGGGCCTGGCCACAACGGCCACTGCTGCCGCTGATGCTT
AA

Translation (513 aa):
MKAGCSIVEKPEGGGGYQFPDWAYKAESSPGSRQIQLWHFILELLQKEEFRHVIAWQQGEYGEFVIKDPD
EVARLWGRRKCKPQMNYDKLSRALRYYYNKRILHKTKGKRFTYKFNFNKLVMPNYPFINIRSSGVVPQSA
PPVPTASSRFHFPPLDSHSPTGDVQPGRFSASSLSASGPESGVTTDRKVEPSDLEDGSASDWHRGMDFMP
SRNALGGGAVGHQKRKPDILLPLFTRPAMYPDPHSPFAISPVPGRGGVLNVPISPALSLTPTMFSYSPSP
GLSPFTSSSCFSFNPEEMKHYLHSQACSVFNYHLSPRTFPRYPGLMVPPLQCQMHPEEPSQFSIKLQPPP
AGRKNRERVESREEAVRGSVPASAPVPSRIKVEPATEKDPDSLRQSTQGKEEQTQEVDSMRSRTIEEGKG
TGFAHPSPTWPSVSISTPSDEPLEGTEDSEDRSVREPGVPEKKEDALMPPKLRLKRRWNDDPEARELNKT
GKFLWNGAGPQGLATTATAAADA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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