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Report for CCDS17639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17639.1 Public Mus musculus 3 Fcgr1 23 108 98 CCDS HistoryNCBI Gene:14129Re-query CCDS DB by CCDS ID:17639.1Re-query CCDS DB by GeneID:14129See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17639.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029748.7 ENSMUSP00000029748.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029748.7Link to Ensembl Protein Viewer:ENSMUSP00000029748.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029748Re-query CCDS DB by Protein ID:ENSMUSP00000029748
Original member Current member NCBI NM_010186.5 NP_034316.1 Accepted alive Link to Nucleotide Sequence:NM_010186.5Link to Protein Sequence:NP_034316.1Re-query CCDS DB by Nucleotide ID:NM_010186Re-query CCDS DB by Protein ID:NP_034316Link to BLAST:NP_034316.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034316.1 404 P26151 404 100% 0 0

Chromosomal Locations for CCDS 17639.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96284276 96284619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96285809 96286093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96286984 96287232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96292253 96292510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96293519 96293539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96293905 96293962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGATTCTTACCAGCTTTGGAGATGACATGTGGCTTCTAACAACTCTGCTACTTTGGGTTCCAGTCGGTG
GGGAAGTGGTTAATGCCACCAAGGCTGTGATCACCTTGCAGCCTCCATGGGTCAGTATTTTCCAGAAGGA
AAATGTCACTTTATGGTGTGAGGGGCCTCACCTGCCTGGAGACAGTTCCACACAATGGTTTATCAACGGA
ACAGCCGTTCAGATCTCCACGCCTAGTTATAGCATCCCAGAGGCCAGTTTTCAGGACAGTGGCGAATACA
GGTGTCAGATAGGTTCCTCAATGCCAAGTGACCCTGTGCAGTTGCAAATCCACAATGATTGGCTGCTACT
CCAGGCCTCCCGCAGAGTCCTCACAGAAGGAGAACCCCTGGCCTTGAGGTGTCACGGATGGAAGAATAAA
CTGGTGTACAATGTGGTTTTCTATAGAAATGGAAAATCCTTTCAGTTTTCTTCAGATTCGGAGGTCGCCA
TTCTGAAAACCAACCTGAGTCACAGCGGCATCTACCACTGCTCAGGCACGGGAAGACACCGCTACACATC
TGCAGGAGTGTCCATCACGGTGAAAGAGCTGTTTACCACGCCAGTGCTGAGAGCATCCGTGTCATCTCCC
TTCCCGGAGGGGAGTCTGGTCACCCTGAACTGTGAGACGAATTTGCTCCTGCAGAGACCCGGCTTACAGC
TTCACTTCTCCTTCTACGTGGGCAGCAAGATCCTGGAGTACAGGAACACATCCTCAGAGTACCATATAGC
AAGGGCGGAAAGAGAAGATGCTGGATTCTACTGGTGTGAGGTAGCCACGGAGGACAGCAGTGTCCTTAAG
CGCAGCCCTGAGTTGGAGCTCCAAGTGCTTGGTCCCCAGTCATCAGCTCCTGTCTGGTTTCACATCCTGT
TTTATCTGTCAGTGGGAATAATGTTTTCGTTGAACACGGTTCTCTATGTGAAAATACACAGGCTGCAGAG
AGAGAAGAAATACAACTTAGAAGTCCCTTTGGTTTCTGAGCAGGGAAAGAAAGCAAATTCCTTTCAGCAA
GTTAGAAGCGATGGCGTGTATGAAGAAGTAACAGCCACTGCGAGCCAGACCACACCAAAAGAAGCGCCCG
ATGGACCTCGAAGCTCAGTGGGTGACTGTGGACCCGAGCAGCCTGAACCCCTTCCTCCCAGTGACAGTAC
TGGGGCACAAACTTCCCAAAGTTGA

Translation (404 aa):
MILTSFGDDMWLLTTLLLWVPVGGEVVNATKAVITLQPPWVSIFQKENVTLWCEGPHLPGDSSTQWFING
TAVQISTPSYSIPEASFQDSGEYRCQIGSSMPSDPVQLQIHNDWLLLQASRRVLTEGEPLALRCHGWKNK
LVYNVVFYRNGKSFQFSSDSEVAILKTNLSHSGIYHCSGTGRHRYTSAGVSITVKELFTTPVLRASVSSP
FPEGSLVTLNCETNLLLQRPGLQLHFSFYVGSKILEYRNTSSEYHIARAEREDAGFYWCEVATEDSSVLK
RSPELELQVLGPQSSAPVWFHILFYLSVGIMFSLNTVLYVKIHRLQREKKYNLEVPLVSEQGKKANSFQQ
VRSDGVYEEVTATASQTTPKEAPDGPRSSVGDCGPEQPEPLPPSDSTGAQTSQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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