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Report for CCDS1797.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1797.1 Public Homo sapiens 2 GALM 24 110 108 CCDS HistoryNCBI Gene:130589Re-query CCDS DB by CCDS ID:1797.1Re-query CCDS DB by GeneID:130589See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1797.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272252.10 ENSP00000272252.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272252.10Link to Ensembl Protein Viewer:ENSP00000272252.5Re-query CCDS DB by Nucleotide ID:ENST00000272252Re-query CCDS DB by Protein ID:ENSP00000272252
Original member Current member NCBI NM_138801.3 NP_620156.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138801.3Link to Protein Sequence:NP_620156.1Re-query CCDS DB by Nucleotide ID:NM_138801Re-query CCDS DB by Protein ID:NP_620156Link to BLAST:NP_620156.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620156.1 342 Q96C23 342 100% 0 0

Chromosomal Locations for CCDS 1797.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 38666162 38666351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38675912 38676066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38681280 38681486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38689813 38689894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38729556 38729697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38731735 38731909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38733488 38733565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGGCTTCGGTGACCAGGGCCGTGTTTGGAGAGCTGCCCTCGGGAGGAGGGACAGTGGAGAAGTTCCAGC
TGCAGTCAGACCTCTTGAGAGTGGACATCATCTCCTGGGGCTGCACGATCACAGCCCTAGAGGTCAAAGA
CAGGCAGGGGAGAGCCTCGGACGTGGTGCTTGGCTTCGCCGAGTTGGAAGGATACCTCCAAAAGCAGCCA
TACTTTGGAGCAGTTATTGGGAGGGTGGCCAACCGAATCGCCAAAGGAACCTTCAAGGTGGATGGGAAGG
AGTATCACCTGGCCATTAACAAGGAACCCAACAGTCTGCATGGAGGAGTCAGAGGGTTTGATAAAGTGCT
CTGGACCCCTCGGGTGCTGTCAAATGGCGTCCAGTTCTCGCGCATCAGTCCAGATGGTGAAGAAGGCTAC
CCCGGAGAGTTAAAAGTCTGGGTGACATACACCCTGGATGGCGGAGAGCTCATAGTCAACTACAGAGCAC
AAGCCAGTCAGGCCACACCAGTCAACCTGACCAACCATTCTTACTTCAACCTGGCAGGCCAGGCTTCCCC
AAATATAAATGACCATGAAGTCACCATAGAAGCGGATACTTATTTGCCTGTGGATGAAACCCTGATTCCT
ACAGGAGAAGTTGCCCCAGTGCAAGGCACTGCATTCGACCTGAGAAAGCCAGTGGAGCTTGGAAAACACC
TGCAGGACTTCCATCTCAATGGTTTTGACCACAATTTCTGTCTGAAGGGATCTAAAGAAAAGCATTTTTG
TGCAAGGGTGCATCATGCTGCAAGCGGGCGGGTACTAGAAGTATACACCACCCAGCCCGGGGTCCAGTTT
TACACGGGCAACTTCCTGGATGGCACATTAAAGGGCAAGAATGGAGCTGTCTATCCCAAGCACTCCGGTT
TCTGCCTGGAGACTCAGAACTGGCCTGATGCAGTCAATCAGCCCCGCTTCCCTCCTGTGCTGCTGAGGCC
TGGTGAGGAGTATGACCACACCACCTGGTTCAAGTTTTCTGTGGCTTAA

Translation (342 aa):
MASVTRAVFGELPSGGGTVEKFQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQP
YFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSNGVQFSRISPDGEEGY
PGELKVWVTYTLDGGELIVNYRAQASQATPVNLTNHSYFNLAGQASPNINDHEVTIEADTYLPVDETLIP
TGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKEKHFCARVHHAASGRVLEVYTTQPGVQF
YTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFSVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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