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Report for CCDS18509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18509.1 Public Mus musculus 4 Pik3r3 23 108 98 CCDS HistoryNCBI Gene:18710Re-query CCDS DB by CCDS ID:18509.1Re-query CCDS DB by GeneID:18710See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18509.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030464.13 ENSMUSP00000030464.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030464.13Link to Ensembl Protein Viewer:ENSMUSP00000030464.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030464Re-query CCDS DB by Protein ID:ENSMUSP00000030464
Original member NCBI NM_001355584.1 NP_001342513.1 Updated not alive Link to Nucleotide Sequence:NM_001355584.1Link to Protein Sequence:NP_001342513.1Re-query CCDS DB by Nucleotide ID:NM_001355584Re-query CCDS DB by Protein ID:NP_001342513
Current member NCBI NM_001355584.2 NP_001342513.1 Accepted alive Link to Nucleotide Sequence:NM_001355584.2Link to Protein Sequence:NP_001342513.1Re-query CCDS DB by Nucleotide ID:NM_001355584Re-query CCDS DB by Protein ID:NP_001342513Link to BLAST:NP_001342513.1
Original member NCBI NM_001355585.1 NP_001342514.1 Updated not alive Link to Nucleotide Sequence:NM_001355585.1Link to Protein Sequence:NP_001342514.1Re-query CCDS DB by Nucleotide ID:NM_001355585Re-query CCDS DB by Protein ID:NP_001342514
Current member NCBI NM_001355585.2 NP_001342514.1 Accepted alive Link to Nucleotide Sequence:NM_001355585.2Link to Protein Sequence:NP_001342514.1Re-query CCDS DB by Nucleotide ID:NM_001355585Re-query CCDS DB by Protein ID:NP_001342514Link to BLAST:NP_001342514.1
Original member NCBI NM_181585.6 NP_853616.1 Updated not alive Link to Nucleotide Sequence:NM_181585.6Link to Protein Sequence:NP_853616.1Re-query CCDS DB by Nucleotide ID:NM_181585Re-query CCDS DB by Protein ID:NP_853616
Current member NCBI NM_181585.7 NP_853616.1 Accepted alive Link to Nucleotide Sequence:NM_181585.7Link to Protein Sequence:NP_853616.1Re-query CCDS DB by Nucleotide ID:NM_181585Re-query CCDS DB by Protein ID:NP_853616Link to BLAST:NP_853616.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342513.1 461 Q64143 461 100% 0 0
NP_001342514.1 461 Q64143 461 100% 0 0
NP_853616.1 461 Q64143 461 100% 0 0

Chromosomal Locations for CCDS 18509.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116222308 116222413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116256168 116256276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116259545 116259643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116270788 116270968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116272739 116272864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116286056 116286198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116286823 116286999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116291675 116291749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116292097 116292267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116299634 116299832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGTACAATACGGTGTGGAGTATGGACCGCGATGACGCAGACTGGAGGGAGGTGATGATGCCCTATTCGA
CAGAACTGATATTTTATATTGAAATGGATCCTCCAGCTCTTCCACCAAAGCCACCTAAGCCAATGACTCC
AGCAGTCACAAATGGAATGAAGGACAGTTTCATTTCTCTTCAAGATGCAGAGTGGTACTGGGGAGATATT
TCCAGGGAAGAGGTAAATGACAAATTGCGGGACATGCCAGATGGTACCTTCTTAGTTCGTGATGCCTCAA
CGAAAATGCAGGGGGATTATACATTGACTTTGAGGAAGGGAGGAAATAATAAATTAATAAAGATCTATCA
TCGGGATGGTAAATATGGCTTCTCTGAGCCCCTGACGTTTACTTCTGTGGTGGAGCTTATTAACCACTAC
CACCACGAGTCTCTCGCTCAGTACAATCCCAAACTCGACGTGAAGCTGACGTACCCAGTATCCAGATTCC
AACAGGATCAGTTGGTAAAAGAAGATAACATTGATGCAGTAGGTAAAAATCTGCAGGAGTTCCACTCTCA
GTATCAGGAGAAGAGCAAAGAGTATGACAGGCTGTATGAAGAGTACACAAGGACATCACAGGAAATACAA
ATGAAGAGGACTGCCATTGAAGCCTTTAATGAAACAATTAAAATATTTGAGGAGCAGTGTCATACCCAAG
AACAACACAGTAAAGACTATATCGAGCGCTTTCGCAGAGAGGGGAATGAGAAGGAGATCGAGCGAATTAT
GATGAATTATGATAAATTGAAATCACGTCTTGGTGAGATTCATGATAGCAAACTGCGTCTTGAGCAGGAC
TTGAAGAAACAAGCTTTGGACAACCGGGAAATAGATAAAAAAATGAATAGCATCAAACCCGACTTGATCC
AGCTGCGTAAGATCCGGGATCAGCACCTTGTATGGCTCAATCACAGAGGAGTGAGGCAGAGGCGCCTGAA
TGCCTGGCTGGGGATCAAGAATGAGGACTCAGATGAAAGCTATTTTATCAATGAGGAAGATGAGAACCTG
CCGCATTATGATGAGAAAACCTGGTTTGTGGAGGATATCAACCGAGTACAAGCAGAGGACTTGCTTTATG
GGAAACCAGATGGTGCATTCTTAATTCGTGAGAGTAGCAAGAAAGGATGTTACGCTTGTTCTGTGGTTGC
AGACGGGGAAGTGAAGCACTGTGTCATCTACAGCACGGCTCGAGGATATGGCTTTGCAGAACCCTACAAC
CTGTACAGCTCACTGAAGGAGCTGGTGCTCCATTACCAGCAGACATCCCTGGTTCAGCACAACGACTCCC
TCAACGTCAGGCTCGCCTACCCTGTCCATGCACAGATGCCTACGCTCTGCAGATAA

Translation (461 aa):
MYNTVWSMDRDDADWREVMMPYSTELIFYIEMDPPALPPKPPKPMTPAVTNGMKDSFISLQDAEWYWGDI
SREEVNDKLRDMPDGTFLVRDASTKMQGDYTLTLRKGGNNKLIKIYHRDGKYGFSEPLTFTSVVELINHY
HHESLAQYNPKLDVKLTYPVSRFQQDQLVKEDNIDAVGKNLQEFHSQYQEKSKEYDRLYEEYTRTSQEIQ
MKRTAIEAFNETIKIFEEQCHTQEQHSKDYIERFRREGNEKEIERIMMNYDKLKSRLGEIHDSKLRLEQD
LKKQALDNREIDKKMNSIKPDLIQLRKIRDQHLVWLNHRGVRQRRLNAWLGIKNEDSDESYFINEEDENL
PHYDEKTWFVEDINRVQAEDLLYGKPDGAFLIRESSKKGCYACSVVADGEVKHCVIYSTARGYGFAEPYN
LYSSLKELVLHYQQTSLVQHNDSLNVRLAYPVHAQMPTLCR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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