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Report for CCDS18515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18515.1 Public Mus musculus 4 Prdx1 23 108 98 CCDS HistoryNCBI Gene:18477Re-query CCDS DB by CCDS ID:18515.1Re-query CCDS DB by GeneID:18477See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18515.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106470.7 ENSMUSP00000102078.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106470.7Link to Ensembl Protein Viewer:ENSMUSP00000102078.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106470Re-query CCDS DB by Protein ID:ENSMUSP00000102078
Original member Current member EBI ENSMUST00000135573.7 ENSMUSP00000114159.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135573.7Link to Ensembl Protein Viewer:ENSMUSP00000114159.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135573Re-query CCDS DB by Protein ID:ENSMUSP00000114159
Original member NCBI NM_011034.4 NP_035164.1 Updated not alive Link to Nucleotide Sequence:NM_011034.4Link to Protein Sequence:NP_035164.1Re-query CCDS DB by Nucleotide ID:NM_011034Re-query CCDS DB by Protein ID:NP_035164
Current member NCBI NM_011034.5 NP_035164.1 Accepted alive Link to Nucleotide Sequence:NM_011034.5Link to Protein Sequence:NP_035164.1Re-query CCDS DB by Nucleotide ID:NM_011034Re-query CCDS DB by Protein ID:NP_035164Link to BLAST:NP_035164.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035164.1 199 P35700 199 100% 0 0

Chromosomal Locations for CCDS 18515.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116687418 116687523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116691776 116691929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116692883 116693005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116693717 116693847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116699171 116699256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGTCTTCAGGAAATGCAAAAATTGGGTATCCTGCTCCCAACTTCAAAGCTACAGCTGTTATGCCAGATG
GACAATTCAAAGATATCAGCCTAAGTGAATACAAAGGAAAATATGTTGTGTTCTTCTTTTACCCTCTTGA
CTTTACTTTTGTGTGTCCCACGGAGATCATTGCTTTCAGTGATAGAGCCGATGAATTTAAGAAACTCAAC
TGCCAAGTGATTGGCGCTTCTGTGGATTCTCACTTCTGTCATCTGGCATGGATTAACACACCCAAGAAAC
AAGGAGGATTGGGACCCATGAACATTCCCTTAATATCAGATCCCAAGCGCACCATTGCTCAGGATTATGG
AGTCTTAAAGGCTGATGAAGGTATCTCTTTCAGGGGCCTTTTTATTATTGATGATAAAGGTATCCTTCGA
CAGATAACAATAAACGATCTTCCCGTTGGCCGCTCTGTGGATGAGATTATACGACTAGTCCAGGCCTTCC
AGTTCACTGACAAACATGGTGAAGTGTGTCCAGCTGGCTGGAAACCTGGCAGTGATACCATCAAGCCTGA
TGTCAATAAGAGCAAAGAGTATTTCTCTAAGCAGAAGTGA

Translation (199 aa):
MSSGNAKIGYPAPNFKATAVMPDGQFKDISLSEYKGKYVVFFFYPLDFTFVCPTEIIAFSDRADEFKKLN
CQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR
QITINDLPVGRSVDEIIRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVNKSKEYFSKQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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