NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18748.1 Public Mus musculus 4 Tent5b 23 108 98 CCDS HistoryNCBI Gene:100342Re-query CCDS DB by CCDS ID:18748.1Re-query CCDS DB by GeneID:100342See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051676.6 ENSMUSP00000056015.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051676.6Link to Ensembl Protein Viewer:ENSMUSP00000056015.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051676Re-query CCDS DB by Protein ID:ENSMUSP00000056015
Original member Current member NCBI NM_175307.6 NP_780516.1 Accepted alive Link to Nucleotide Sequence:NM_175307.6Link to Protein Sequence:NP_780516.1Re-query CCDS DB by Nucleotide ID:NM_175307Re-query CCDS DB by Protein ID:NP_780516Link to BLAST:NP_780516.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780516.1 427 Q8C152 427 100% 0 0

Chromosomal Locations for CCDS 18748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133480300 133480563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133486084 133487103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1284 nt):
ATGATGCCGTCGGAGAGTGGAGCTGAGAGCCTGGAGCAGCCAGCTGCGCAGGTGGGGACCGGTGCAGCCT
CGGCAGTGGCCACGGCTGGGGCGGCCGGCGGCGGCCCGGACCCGGAGGCCTCCTCGGCCTCCCTGGGACG
GCACCAGAGTCGGCTGAGCTGGCCACAGGTGAAGCGGCTGGACGCGCTGCTGAAAGAGCCGATCCCCATT
CACGGACGAGGCAACTTCCCCACGCTGAGCGTGCAGCCCCAGCAGATCGTGCAGGTGGTCCGCAGCAGCT
TGGAAGAACACGGACTGCGTGTACACAGCGTGCGCCTGCATGGCTCAGCCGCCAGCCACGTGCTGCACCC
CGAGAGCGGCCTAGGCTACAAGGACCTGGACTTGGTGTTCCAGATGGACCTGCGGAGTGAGGTGTCCTTC
CAGCTCACCAAGGCAGTGGTCCTGGCTTGCCTGCTGGACTTCCTGCCAGCGGGAGTGAGCCGGGCCAAGA
TAACGCCGCTGACACTCAAGGAAGCCTACGTGCAGAAGCTGGTCAAAGTGTGCACCGACCTGGACCGCTG
GAGCCTCATCTCTCTGTCCAACAAGAGCGGTAAGAACGTGGAACTCAAGTTCGTGGACTCTGTGAGACGC
CAGTTCGAATTCAGCATCGACTCCTTCCAAATCATCTTGGACTCGCTGCTCCTCTTTGGCCAGTGCTCAT
CCACACCTATGTCGGAGGCCTTCCACCCTACGGTGACCGGGGAGAGCCTCTATGGGGACTTCGCTGAGGC
CTTGGAGCACCTGCAGCACCGTGTCATCGCCACACGCAGCCCCGAGGAGATCCGAGGTGGTGGCCTCCTC
AAGTACTGCCACCTCCTGGTACGGGGCTTCCGGCCAAGGCCCAGCACTGACGTTCGCGCCCTCCAGCGAT
ACATGTGTTCCCGTTTCTTCATCGACTTTCCGGACCTGGTGGAACAGAGGCGCATTCTGGAGCGCTACCT
GGAGGCCCACTTTGGCGGAGCGGAAGCAGCCCGCCGGTATGCTTGCCTTGTGACACTGCACCAGGTGGTC
AACGAGAGCACAGTGTGTCTCATGAGCCACGAGCGCCGCCAGACCCTGGACCTTATTGCCATGCTCGCCC
TCCAGGCACTGGCTGAACAGGGCCCTGCTGCCATGGCTGCCCTGGCCTGGCGACGTCCTGGTTCAGATGG
GGTGGTCCCAGCCACTGTTAATTACTATGTGACCCCCATGCAGCCACTGCTGCCCCGAGCTCACTCCTAT
CCTACCTGGCTGCCTTGCAACTGA

Translation (427 aa):
MMPSESGAESLEQPAAQVGTGAASAVATAGAAGGGPDPEASSASLGRHQSRLSWPQVKRLDALLKEPIPI
HGRGNFPTLSVQPQQIVQVVRSSLEEHGLRVHSVRLHGSAASHVLHPESGLGYKDLDLVFQMDLRSEVSF
QLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKVCTDLDRWSLISLSNKSGKNVELKFVDSVRR
QFEFSIDSFQIILDSLLLFGQCSSTPMSEAFHPTVTGESLYGDFAEALEHLQHRVIATRSPEEIRGGGLL
KYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFPDLVEQRRILERYLEAHFGGAEAARRYACLVTLHQVV
NESTVCLMSHERRQTLDLIAMLALQALAEQGPAAMAALAWRRPGSDGVVPATVNYYVTPMQPLLPRAHSY
PTWLPCN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH