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Report for CCDS18856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18856.1 Public Mus musculus 4 Padi1 23 108 98 CCDS HistoryNCBI Gene:18599Re-query CCDS DB by CCDS ID:18856.1Re-query CCDS DB by GeneID:18599See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18856.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026378.3 ENSMUSP00000026378.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026378.3Link to Ensembl Protein Viewer:ENSMUSP00000026378.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026378Re-query CCDS DB by Protein ID:ENSMUSP00000026378
Original member Current member NCBI NM_011059.2 NP_035189.1 Accepted alive Link to Nucleotide Sequence:NM_011059.2Link to Protein Sequence:NP_035189.1Re-query CCDS DB by Nucleotide ID:NM_011059Re-query CCDS DB by Protein ID:NP_035189Link to BLAST:NP_035189.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035189.1 662 Q9Z185 662 100% 0 0

Chromosomal Locations for CCDS 18856.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 140814621 140814854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140817126 140817251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140818294 140818373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140818865 140818958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140819727 140819871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140824822 140824973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140826499 140826606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140826843 140826966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140827902 140828005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140828091 140828263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140829154 140829279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140829372 140829486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140830774 140830835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140831445 140831517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140832292 140832472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140845560 140845651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGGCCTCCCCGAGAGCTGTGCAGCTGTCTCTGAGAAAGCCGACTCACGCTGTGTGCGTGGTAGGTGTGG
AGACACTGGTGAACGTCTATAGTGATGTGCCCAAAGGTGCCAAGACCTTTGGGGTGTCTGGGAGCTCTGA
GGTGAAGATCTACATGGTCTACGATCCCTCGAGAGTGGCAGAGCCCGCAGGCTGGGCCCACTGGCCCCTG
GATGCCAACGTGGACGTGGTGGTAGTGGCGGACACAGTCAGTAAGGACTTATATGACTTCAAGGTGAAGG
TGTCATACTTTGAGTCACAGGAGGCTGCTGCCCTGGCCCACAGTGTGCTCTACCTAACTGCTGTTGATGT
GTCCCTTGATGTCGACACAGGCCGCACAGGCAAGGTGAAGAAAGGCTCTGGTGACAAGAAAACCTGGCGC
TGGGGCCCTGGGGGCTCCGGGGCCATCCTGTTGGTAAACTGTGACAGAGATATCCATGGGTCCAGGGAAG
ACCTGCATGCTAACCATTTGAAGTCGCTGGAGGACCTGCAGGACATGTCCCCAATGGTGCTGAGTTGTGG
TGGCCCTGATGAGCTTTTTGAGAGCCACAAGCTGGTCTTGAAGGCATCTTTGTCAGATTCCAGAAGACTG
AAGGTCTTCTGTGCCCGGGGTGGGACATCCCTCTCCAACTACAAACAGGTGCTAGGGCCCCGTCACAGCT
CCTATGAGGTGGAAAGGCATTCTGGGGAGAGGGCCATCCAGTTCTACGTGGAAGGGCTCGCCTTCCCCGA
CGCCAGTTTCTCAGGGCTGCTCTCTCTCAGTGTCAGCCTGGTGGACACACGGCCCCTCTCTGAGGTGTCA
GTCTTCACTGACAGCGTGACCTTCCGGGTGGCCCCCTGGATCATGACCCCCAACACTCAGCCGCCCCTGG
AGCTGTATGTGTGCAGCGTGACAGATATCCACGGCCGCAATGACAAGTTCCTGGAGGACATGTCCCACCT
GGCCACAAAGGCCAACTGCAAACTAGTGGTCTGTCCCCGGGCAGAGAATCGCAACGATCGCTGGATCCAG
GACGAGTTGGAGTTTGGCTACATTGACGCACCTCACAAATCCTTCCCTGTGGTCTTTGATTCCCCCCGAA
ACAGAGGCTTGAGGGACTTCGCCCTTAAGAGGATCCTGGGTCCTGACTTTGGATATGTGACCCGGGAGAT
CGAGTTCGCAGGTGCCTCTGGCCTGGATTCCTTCGGCAACCTGGATGTGAGCCCACCGGTGAGGGTGGGC
AACACAGACTACCCCCTCGGCAGAATCCTCATTGGTGGCAGCTTCCCCAAGCCCAGTGGGCGGCGGATGG
CCAGAGTGGTGCGTGACTTCCTGCAGGCCCAGCAGGTGCAGTCTCCTGTGGAACTCTACTCCGACTGGCT
TTCCGTGGGCCACGTGGATGAGTTTCTGAGCTTCGTGCCCACCTCTGACCAAAAGGGCTTCCGCCTCCTC
CTGGCCAGCCCCAGTGCCTGCCTCCAGCTGTTCCAGGAGAAGAAGGAGGAGGGCTACGGGGAGGCTGAGC
AGTTTGATGGCCTCAAGCATAAGGCAAAAAGAAGCATCAACGACATCTTAGCTGACAAGCACCTCAGGAG
GGATAGCGCGCACGTGCAGAAATGCATCGACTGGAACCGCGAGGTGCTAAAGCGGGAGCTGGGCCTCTCC
GAGAGCGACATCGTGGACATTCCACAGCTCTTCTTCCTGAAGGGAGCCTACGCTGAAGCCTTCTTTCCTG
ACATGGTCAACATGGTGGTTCTCGGCAAGTACCTGGGCATCCCTAAGCCCTTCGGCCCGCTCATCAATGG
TCGCTGCTGCCTGGAGGAGAAGGTGCGCTCCCTGCTGGAGCCGCTGGGTCTGCGCTGCGTCTTTATCGAC
GACTTTCTCTTTTACCACCAACTGCTCGGAGAGATCCACTGTGGCACCAACGTGCGGAGGAAACCTTTTA
CCTTTAAGTGGTGGAACTCCGTGCCCTGA

Translation (662 aa):
MASPRAVQLSLRKPTHAVCVVGVETLVNVYSDVPKGAKTFGVSGSSEVKIYMVYDPSRVAEPAGWAHWPL
DANVDVVVVADTVSKDLYDFKVKVSYFESQEAAALAHSVLYLTAVDVSLDVDTGRTGKVKKGSGDKKTWR
WGPGGSGAILLVNCDRDIHGSREDLHANHLKSLEDLQDMSPMVLSCGGPDELFESHKLVLKASLSDSRRL
KVFCARGGTSLSNYKQVLGPRHSSYEVERHSGERAIQFYVEGLAFPDASFSGLLSLSVSLVDTRPLSEVS
VFTDSVTFRVAPWIMTPNTQPPLELYVCSVTDIHGRNDKFLEDMSHLATKANCKLVVCPRAENRNDRWIQ
DELEFGYIDAPHKSFPVVFDSPRNRGLRDFALKRILGPDFGYVTREIEFAGASGLDSFGNLDVSPPVRVG
NTDYPLGRILIGGSFPKPSGRRMARVVRDFLQAQQVQSPVELYSDWLSVGHVDEFLSFVPTSDQKGFRLL
LASPSACLQLFQEKKEEGYGEAEQFDGLKHKAKRSINDILADKHLRRDSAHVQKCIDWNREVLKRELGLS
ESDIVDIPQLFFLKGAYAEAFFPDMVNMVVLGKYLGIPKPFGPLINGRCCLEEKVRSLLEPLGLRCVFID
DFLFYHQLLGEIHCGTNVRRKPFTFKWWNSVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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