NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1889.1 Public Homo sapiens 2 PROKR1 24 110 108 CCDS HistoryNCBI Gene:10887Re-query CCDS DB by CCDS ID:1889.1Re-query CCDS DB by GeneID:10887See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1889.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303786.5 ENSP00000303775.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000303786.5Link to Ensembl Protein Viewer:ENSP00000303775.4Re-query CCDS DB by Nucleotide ID:ENST00000303786Re-query CCDS DB by Protein ID:ENSP00000303775
Original member Current member NCBI NM_138964.4 NP_620414.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138964.4Link to Protein Sequence:NP_620414.1Re-query CCDS DB by Nucleotide ID:NM_138964Re-query CCDS DB by Protein ID:NP_620414Link to BLAST:NP_620414.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620414.1 393 Q8TCW9 393 100% 0 0

Chromosomal Locations for CCDS 1889.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 68645822 68646306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68654880 68655576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGAGACCACCATGGGGTTCATGGATGACAATGCCACCAACACTTCCACCAGCTTCCTTTCTGTGCTCA
ACCCTCATGGAGCCCATGCCACTTCCTTCCCATTCAACTTCAGCTACAGCGACTATGATATGCCTTTGGA
TGAAGATGAGGATGTGACCAATTCCAGGACGTTCTTTGCTGCCAAGATTGTCATTGGGATGGCCCTGGTG
GGCATCATGCTGGTCTGCGGCATTGGAAACTTCATCTTTATCGCTGCCCTGGTCCGCTACAAGAAACTGC
GCAACCTCACCAACCTGCTCATCGCCAACCTGGCCATCTCTGACTTCCTGGTGGCCATTGTCTGCTGCCC
CTTTGAGATGGACTACTATGTGGTGCGCCAGCTCTCCTGGGAGCACGGCCACGTCCTGTGCACCTCTGTC
AACTACCTGCGCACTGTCTCTCTCTATGTCTCCACCAATGCCCTGCTGGCCATCGCCATTGACAGGTATC
TGGCTATTGTCCATCCGCTGAGACCACGGATGAAGTGCCAAACAGCCACTGGCCTGATTGCCTTGGTGTG
GACGGTGTCCATCCTGATCGCCATCCCTTCCGCCTACTTCACCACCGAGACGGTCCTCGTCATTGTCAAG
AGCCAGGAAAAGATCTTCTGCGGCCAGATCTGGCCTGTGGACCAGCAGCTCTACTACAAGTCCTACTTCC
TCTTTATCTTTGGCATAGAATTCGTGGGCCCCGTGGTCACCATGACCCTGTGCTATGCCAGGATCTCCCG
GGAGCTCTGGTTCAAGGCGGTCCCTGGATTCCAGACAGAGCAGATCCGCAAGAGGCTGCGCTGCCGCAGG
AAGACGGTCCTGGTGCTCATGTGCATCCTCACCGCCTACGTGCTATGCTGGGCGCCCTTCTACGGCTTCA
CCATCGTGCGCGACTTCTTCCCCACCGTGTTTGTGAAGGAGAAGCACTACCTCACTGCCTTCTACATCGT
CGAGTGCATCGCCATGAGCAACAGCATGATCAACACTCTGTGCTTCGTGACCGTCAAGAACGACACCGTC
AAGTACTTCAAAAAGATCATGTTGCTCCACTGGAAGGCTTCTTACAATGGCGGTAAGTCCAGTGCAGACC
TGGACCTCAAGACAATTGGGATGCCTGCCACCGAAGAGGTGGACTGCATCAGACTAAAATAA

Translation (393 aa):
METTMGFMDDNATNTSTSFLSVLNPHGAHATSFPFNFSYSDYDMPLDEDEDVTNSRTFFAAKIVIGMALV
GIMLVCGIGNFIFIAALVRYKKLRNLTNLLIANLAISDFLVAIVCCPFEMDYYVVRQLSWEHGHVLCTSV
NYLRTVSLYVSTNALLAIAIDRYLAIVHPLRPRMKCQTATGLIALVWTVSILIAIPSAYFTTETVLVIVK
SQEKIFCGQIWPVDQQLYYKSYFLFIFGIEFVGPVVTMTLCYARISRELWFKAVPGFQTEQIRKRLRCRR
KTVLVLMCILTAYVLCWAPFYGFTIVRDFFPTVFVKEKHYLTAFYIVECIAMSNSMINTLCFVTVKNDTV
KYFKKIMLLHWKASYNGGKSSADLDLKTIGMPATEEVDCIRLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH