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Report for CCDS19034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19034.1 Public Mus musculus 4 Mmp23 23 108 98 CCDS HistoryNCBI Gene:26561Re-query CCDS DB by CCDS ID:19034.1Re-query CCDS DB by GeneID:26561See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19034.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030937.1 ENSMUSP00000030937.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030937.1Link to Ensembl Protein Viewer:ENSMUSP00000030937.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000030937Re-query CCDS DB by Protein ID:ENSMUSP00000030937
Original member NCBI NM_011985.3 NP_036115.1 Updated not alive Link to Nucleotide Sequence:NM_011985.3Link to Protein Sequence:NP_036115.1Re-query CCDS DB by Nucleotide ID:NM_011985Re-query CCDS DB by Protein ID:NP_036115
Current member NCBI NM_011985.4 NP_036115.1 Accepted alive Link to Nucleotide Sequence:NM_011985.4Link to Protein Sequence:NP_036115.1Re-query CCDS DB by Nucleotide ID:NM_011985Re-query CCDS DB by Protein ID:NP_036115Link to BLAST:NP_036115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036115.1 391 O88676-1 391 100% 0 0

Chromosomal Locations for CCDS 19034.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155650709 155650883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155651007 155651133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155651239 155651349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155651431 155651595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155651985 155652152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155652222 155652361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155652449 155652585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155653028 155653180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGGGCTGCCGGGCCTGTCTCCGTCCGGAGGCGTCCGGCGCGGTACAGGGCCGCTGGTTGGGGGCTGCCC
TGAGCGGGTTGTGCCTTCTCTCCGCGTTGGCGTTGCTGGAGTGGCTAGGGGCGCCGACCGAGACCGCCTG
GAGGGCAGCTCAGGGAAATGTAGATGCGCCAAATGTGGGCAGCTCCACTGCCCAGGTACCCAGACTGTTG
ACCATGTCGGTAACCCGAAGACGCCGCTACACGCTGACACCGGCCAGGCTGCGCTGGGACCACTTCAACC
TCACATACAGAGTTCTTTCCTTCCCCCGGAATCTTTTAAGCCCGGAAGAGACGCGAAGGGGCCTGGCTGC
TGCCTTTCGAATGTGGAGTGATGTTTCCCCATTCAGTTTCCGTGAGGTGGCCCCTGAACGTCCCAGTGAC
CTCAAGATAGGTTTCTACCCAGTCAACCACACCGACTGCTTGGTCTCTGCAGTGCACCACTGCTTTGATG
GTCCCACAGGTGAACTGGCCCACGCTTTCTTCCCACCCCACGGTGGCATTCACTTTGATGACAGCGAGTA
CTGGGTCTTGGGCCCCACACGCTACAGTTGGAAGAAAGGTGTTTGGCTCACAAACCTGGTGCACGTGGCA
GCCCATGAGATTGGCCATGCACTGGGCCTGATGCACTCACAGCAAGATCAGGCGCTCATGCACCTCAATG
CCACATTGCGAGGCTGGAAGGCACTGTCCCAGGATGAACTGTGGGGGTTACACCGACTCTATGGCTGCCT
GGACCGGATTTTTGTGTGTGCATCCTGGGCACGAAAGGGATTTTGTGATGTCCGCCAGAGGCTCATGAAG
AGGCTCTGCCCCAGAAGCTGTGATTTCTGTTATGAATTCCCATTTCCCACGGTGGCCACCACCACATCAC
CCACCAGAACGAAAACAAGGTTGGTGAGAGAGGGTAGGAACATGACCTTCCACTGTGGACAGAAGATCCT
ACACAAGAAAGGGAAAGTATACTGGTACAAGGACCAGGAACCCCTGGAGTTCTCCTACCCTGGCTATCTG
GCCCTGGGTGAGGCACAGCTGAGCATCATTGCCAACGCAGTCAACGAAGGCACCTACACATGTGTGGTAC
GCCGGCACCAGCGTGTTCTCAGCACCTACTCCTGGAGGGTCCGAGTGAGGAATTGA

Translation (391 aa):
MGCRACLRPEASGAVQGRWLGAALSGLCLLSALALLEWLGAPTETAWRAAQGNVDAPNVGSSTAQVPRLL
TMSVTRRRRYTLTPARLRWDHFNLTYRVLSFPRNLLSPEETRRGLAAAFRMWSDVSPFSFREVAPERPSD
LKIGFYPVNHTDCLVSAVHHCFDGPTGELAHAFFPPHGGIHFDDSEYWVLGPTRYSWKKGVWLTNLVHVA
AHEIGHALGLMHSQQDQALMHLNATLRGWKALSQDELWGLHRLYGCLDRIFVCASWARKGFCDVRQRLMK
RLCPRSCDFCYEFPFPTVATTTSPTRTKTRLVREGRNMTFHCGQKILHKKGKVYWYKDQEPLEFSYPGYL
ALGEAQLSIIANAVNEGTYTCVVRRHQRVLSTYSWRVRVRN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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