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Report for CCDS19415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19415.1 Public Mus musculus 5 Ppbp 23 108 98 CCDS HistoryNCBI Gene:57349Re-query CCDS DB by CCDS ID:19415.1Re-query CCDS DB by GeneID:57349See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19415.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031319.7 ENSMUSP00000031319.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031319.7Link to Ensembl Protein Viewer:ENSMUSP00000031319.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031319Re-query CCDS DB by Protein ID:ENSMUSP00000031319
Original member Current member NCBI NM_023785.3 NP_076274.1 Accepted alive Link to Nucleotide Sequence:NM_023785.3Link to Protein Sequence:NP_076274.1Re-query CCDS DB by Nucleotide ID:NM_023785Re-query CCDS DB by Protein ID:NP_076274Link to BLAST:NP_076274.1

Chromosomal Locations for CCDS 19415.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 90768603 90768723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90769053 90769182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90769317 90769407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGGGCTTCAGACTCAGACCTACATCGTCCTGCACCAGGGCCTGCCCACTTCATAACCTCCAGATCTTGC
TGCTGCTGGGCCTGATCCTTGTTGCGCTGGCTCCCCTTACAGCTGGAAAATCTGATGGCATGGACCCATA
TATCGAACTGCGCTGCAGATGTACGAATACCATCTCTGGAATCCCATTCAATTCTATCTCCCTTGTGAAT
GTGTACAGGCCAGGAGTTCACTGTGCTGATGTGGAAGTGATAGCCACACTGAAGAATGGACAAAAAACGT
GCCTGGACCCAAATGCCCCTGGCGTCAAGAGAATCGTCATGAAAATCTTGGAAGGTTACTGA

Translation (113 aa):
MGFRLRPTSSCTRACPLHNLQILLLLGLILVALAPLTAGKSDGMDPYIELRCRCTNTISGIPFNSISLVN
VYRPGVHCADVEVIATLKNGQKTCLDPNAPGVKRIVMKILEGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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