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Report for CCDS19740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19740.1 Public Mus musculus 5 Nsun5 23 108 98 CCDS HistoryNCBI Gene:100609Re-query CCDS DB by CCDS ID:19740.1Re-query CCDS DB by GeneID:100609See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19740.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000940.14 ENSMUSP00000000940.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000940.14Link to Ensembl Protein Viewer:ENSMUSP00000000940.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000000940Re-query CCDS DB by Protein ID:ENSMUSP00000000940
Original member Current member NCBI NM_145414.2 NP_663389.2 Accepted alive Link to Nucleotide Sequence:NM_145414.2Link to Protein Sequence:NP_663389.2Re-query CCDS DB by Nucleotide ID:NM_145414Re-query CCDS DB by Protein ID:NP_663389Link to BLAST:NP_663389.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663389.2 465 Q8K4F6 465 100% 0 0

Chromosomal Locations for CCDS 19740.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135369984 135370076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135370191 135370313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135371241 135371415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135371498 135371606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135373954 135374092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135374184 135374299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135374927 135375105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135375275 135375485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135375555 135375698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135375876 135375984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGGGCTGTACGCGGCCGCCGCGGCGGTGCTGGCCGGCGTGGAAAGCCGCCAGGGCTCCCTCAAGGGGT
TGGTGTATTCCAGCAACTTCCAGAACCTGAAGCAGTTGTACGCTCTGGTGTGCGAGACGCAGCGCTACTC
GGCCGTGCTGGACGCTGTCATCGCCAGTGCTGGGCTCCTTCGCGCCGAGAAGAAGCTGAGACCGCACCTT
GCCAAGGTGCTAGTGTATGAATTATTGCTGGGGAAGGGGTTTCGAGGGGGTGGAGGCCGATGGAAGGCTC
TGCTGGGCCGGCACCAGGCAAGGCTCAAGGCTGAGCTGGCCCGACTCAAGGTTCATCGGGGTGTGAGCCG
AAATGAGGACCTGTTGCAAGAGAGCTCCAGACCTGGCCAAGCCTACCAGGTACCACGGTTCGTGCGTGTG
AACACGCTCAAGACCCGCCCTGAGGATGCAATCGATTATTTCAAGAGACAAGGTTTCTCCTACCAGGGTC
GGGCTTCCAGCCTGGAAGACTTGCGAGCTCTCAAGGGGCAGCATTTTCTTTTGGATCCCTTGCTGCCTGA
GCTTCTTGTATTTCCTGCACAGACAGATCTGCACGAGCATCCACTCTACCGTGCTGGCCATCTCATCCTG
CAGGACAAGGCCAGCTGCCTCCCAGCCATGCTGCTGTCCCCCCCGCCAGGCTCCCATGTCATTGATGCCT
GTGCTGCCCCTGGTAACAAGACCAGCTACATTGCAGCCCTTCTAAAGAACCAGGGGAAGATCTTTGCTTT
CGACCAGGACGCTAAGCGGCTGGCAGCCATGGCGACGTTGGTGGCTCGGGCTGGGGTCTCTTGCTGCGAG
TTAGCAGAGAAGGACTTCCTGACAGTCTCTCCCTCTGACCAGCGTTACAGCCAGGTCCAGTACATCTTGC
TGGATCCTTCTTGTAGTGGCTCTGGCATGCTGAGCCGGCAGCTGGAGGAACATGGGGAAGGCACACCTAG
CAAGGAGCGCTTGCAGGCCTTGGCCGGGTTCCAGCAGCGGGCTCTGTGCCATGCACTTAGGTTCCCCTCT
CTGCAGCGCCTAGTCTACTCCACGTGTTCCCTTTGCCAAGAAGAGAATGAAGACGTGGTCCAGGAGGCTC
TACAGCACAACTCGGGGACATTCAGGTTGGCTCCTGTCCTACCCACATGGCCTCACCGAGGTCTGAGTAC
CTTTCCAGGGTCTGAACACTGCCTCCGGGCTTCCCCTGAGACCACGCTCACTGGTGGCTTCTTCATTGCT
GTGTTTGAACGTGCAGAGGTGGTACCAACCCCAGCCCCACAGACCGATGCAATGGATCCAGAACCTCTCA
GCCAAGTCCCAAAGAGAAAGAGAAGACGCAAAGCAGCAGTTGGTGCCAGCATGCAGCCAAGCACATAG

Translation (465 aa):
MGLYAAAAAVLAGVESRQGSLKGLVYSSNFQNLKQLYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHL
AKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNEDLLQESSRPGQAYQVPRFVRV
NTLKTRPEDAIDYFKRQGFSYQGRASSLEDLRALKGQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLIL
QDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLVARAGVSCCE
LAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLSRQLEEHGEGTPSKERLQALAGFQQRALCHALRFPS
LQRLVYSTCSLCQEENEDVVQEALQHNSGTFRLAPVLPTWPHRGLSTFPGSEHCLRASPETTLTGGFFIA
VFERAEVVPTPAPQTDAMDPEPLSQVPKRKRRRKAAVGASMQPST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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