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Report for CCDS19979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19979.1 Public Mus musculus 6 Mest 23 108 98 CCDS HistoryNCBI Gene:17294Re-query CCDS DB by CCDS ID:19979.1Re-query CCDS DB by GeneID:17294See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163949.8 ENSMUSP00000129639.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163949.8Link to Ensembl Protein Viewer:ENSMUSP00000129639.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163949Re-query CCDS DB by Protein ID:ENSMUSP00000129639
Original member Current member NCBI NM_008590.2 NP_032616.1 Accepted alive Link to Nucleotide Sequence:NM_008590.2Link to Protein Sequence:NP_032616.1Re-query CCDS DB by Nucleotide ID:NM_008590Re-query CCDS DB by Protein ID:NP_032616Link to BLAST:NP_032616.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032616.1 335 Q07646-1 335 100% 0 0

Chromosomal Locations for CCDS 19979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30738310 30738335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30740670 30740824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30742141 30742220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30742528 30742605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30742716 30742852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30743014 30743072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30744354 30744394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30744862 30744932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30745082 30745183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30745830 30745906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30746262 30746325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30747052 30747169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGTGCGCCGAGATCGCTTGCGCAGGATGAGAGAGTGGTGGGTCCAAGTAGGGCTCCTGGCTGTGCCCT
TGCTGGCTGCGTACCTGCACATCCCGCCCCCTCAGCTCTCCCCTGCTCTGCACTCATGGAAGACTTCTGG
CAAGTTTTTCACCTACAAAGGCCTACGCATCTTCTACCAAGATTCTGTCGGTGTGGTCGGAAGCCCTGAG
ATAGTTGTGCTTTTACATGGCTTTCCAACATCCAGCTATGACTGGTACAAGATCTGGGAAGGGCTGACCC
TGAGGTTCCATCGAGTGATCGCCCTTGATTTCTTAGGCTTTGGCTTCAGTGACAAGCCGAGACCACATCA
GTACTCCATATTTGAGCAGGCCAGCATCGTAGAGTCCCTTCTGCGGCACCTGGGGCTCCAGAACCGCAGA
ATCAACCTGCTGTCTCACGATTATGGAGATATCGTTGCTCAGGAACTGCTGTACAGGTACAAGCAGAATC
GATCTGGCCGGCTCACCATAAAGAGTCTCTGTCTGTCGAATGGAGGTATCTTTCCTGAGACGCATCGTCC
TCTCCTTCTCCAAAAGCTCCTCAAAGACGGAGGTGTGCTTTCCCCCATCCTCACCAGGCTCATGAATTTC
TTCGTGTTCTCTCGAGGTCTCACTCCAGTCTTTGGACCGTATACTCGACCCACTGAGAGTGAGCTGTGGG
ACATGTGGGCTGTGATTCGCAACAATGACGGCAACCTGGTCATCGACAGTCTTTTACAGTACATTAATCA
AAGGAAGAAATTCAGAAGACGCTGGGTGGGAGCGCTTGCTTCTGTGTCCATCCCCATTCATTTTATCTAT
GGGCCATTGGATCCTATAAATCCGTATCCAGAGTTTTTGGAGCTGTACAGGAAAACGCTGCCGCGGTCCA
CAGTGTCGATTCTGGATGACCACATTAGCCACTACCCACAGCTAGAGGATCCCATGGGCTTCTTGAATGC
ATATATGGGCTTCATCAACTCCTTCTGA

Translation (335 aa):
MVRRDRLRRMREWWVQVGLLAVPLLAAYLHIPPPQLSPALHSWKTSGKFFTYKGLRIFYQDSVGVVGSPE
IVVLLHGFPTSSYDWYKIWEGLTLRFHRVIALDFLGFGFSDKPRPHQYSIFEQASIVESLLRHLGLQNRR
INLLSHDYGDIVAQELLYRYKQNRSGRLTIKSLCLSNGGIFPETHRPLLLQKLLKDGGVLSPILTRLMNF
FVFSRGLTPVFGPYTRPTESELWDMWAVIRNNDGNLVIDSLLQYINQRKKFRRRWVGALASVSIPIHFIY
GPLDPINPYPEFLELYRKTLPRSTVSILDDHISHYPQLEDPMGFLNAYMGFINSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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