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Report for CCDS20281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20281.1 Public Mus musculus 6 Clec4f 23 108 98 CCDS HistoryNCBI Gene:51811Re-query CCDS DB by CCDS ID:20281.1Re-query CCDS DB by GeneID:51811See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20281.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014686.2 ENSMUSP00000014686.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014686.2Link to Ensembl Protein Viewer:ENSMUSP00000014686.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000014686Re-query CCDS DB by Protein ID:ENSMUSP00000014686
Original member Current member NCBI NM_016751.3 NP_058031.2 Accepted alive Link to Nucleotide Sequence:NM_016751.3Link to Protein Sequence:NP_058031.2Re-query CCDS DB by Nucleotide ID:NM_016751Re-query CCDS DB by Protein ID:NP_058031Link to BLAST:NP_058031.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058031.2 548 P70194 548 99.8175% 0 1

Chromosomal Locations for CCDS 20281.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83645211 83645370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83645896 83646014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83646788 83646939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83652359 83653300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83654683 83654763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83655058 83655174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83655957 83656032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGAAGGAGGCCGAGCTGAACAGAGATATGGCTAGATATTGCACAGACAACCAGTGTGTCTCCCTACAGC
CCCAAGGACTGGGGCCTAAGTCAGCTGCTCTCATGGCTCCCAGGACCCTGCGGCACGTCCAGGTCATTCT
GGCATTAATGGTGGTGACTGTGATCTTTTCTCTCCTTGCTCTTTTTGTGGTGGCTTCACAGCCTTGGAGA
CCTGAGTGGAATAAAGAGCCTCCCTCCCTCCTGCTTCGGGGAAGCAACAACTCTGGACACGACAATCATT
CCCAATTTGTCAGGGAGACAGAAATGCAAGTGGCTATCCAGAGGCTTAGGGACTATGAGGAGAATTCTAG
CAGCTGTCACAAGGAGGTACAGATACTGAAGTACCAAATGGACAATGTTAGTTCTCTGGTGCAGTTGCTT
GGGAGCCATCTAGAGGATGTGAATGCTGACATCCTGCAGACAAAAGATGTGCTGAAGGAATCTGGAGCCT
TGGCTTTGGAGACCCAGGCGCTGAGAAGCTCCTTGGAGGTGGCCAGTGCTGATATCCATAGTCTGAGAGG
AGATTTGGAAAAGGCAAACGCTATGACTTCCCAGACCCGAGGTCTCTTAAAGAGCAGCACAGAAAACACC
AGTGCTGAGCTCCACGTGCTGGGCAGAGGCCTGGAGGAAGCCCAGTCTGAGATCCAGGCGTTGAGGGGAA
GTCTGCAGAGTGCAAATGACCTCAGCTCCCAGACCCAGGGCTTTCTCCAGCACAGTATGGACAACATTAG
TGCTCAGATCCAGACCGTGAGAGATGGTATGGAAAGGGCTGGTGAAAAGATGAACTCGTTAAAGAAAGAG
CTGGAAACACTCACTGCTCAGACTCAAAAGGCAAATGGCCACCTGGAGCAGACAGATGCCCAGATCCAGG
GCTTAAAAGCTGAGCTGAAAAGCACCAGTTCCTTGAACTCCCGGATTGAGGTGGTCAATGGCCAAATGAA
AGATGCCAGCAGAGAGTTACAGACCCTGAGAAGGGACCTGAGTGATGTCTCAGCTTTGAAGTCCAATGTC
CAGATGCTACAGAGCAATCTTCAGAGGGCCAAGACAGAGATGCAGAGTTTGAAGGCAGATCTGCAGGCGA
CCAAAGCCCTCACTGCCAAGATTCAGGGGGAGCAGAATCGCCTGGGGGCCCTGCAGGAAGCTGTGGCTGC
ACAGAAGCAGGAGCAGAAGACTCAGAATCAGGTTCTCCAGCTGATCGCGCAGAACTGGAAGTACTTCAAT
GGAAACTTTTATTACTTTTCTCGTGACAAGAAGCCGTGGCGGGAGGCTGAGAAGTTCTGTACGTCCCAGG
GAGCGCACCTGGCTTCGGTGACCTCTCAGGAGGAACAGGCATTCCTGGTACAGACTACAAGTTCTGGGGA
CCATTGGATTGGGCTCACTGACCAGGGCACAGAGGGCATCTGGCGCTGGGTAGATGGGACACCATTCAAC
AATGCCCAGAGCAAAGGGTTTTGGGGGAAAAATCAGCCTGACAACTGGAGACATAGGAACGGAGAGCGAG
AAGACTGTGTTCACGTCCGGCAGCAGTGGAACGACATGGCCTGTGGATCCTCCTACCCCTGGGTGTGCAA
GAAGTCCACAGGGTGGTCTGCGGCCAGAGTAGGCTAG

Translation (548 aa):
MKEAELNRDMARYCTDNQCVSLQPQGLGPKSAALMAPRTLRHVQVILALMVVTVIFSLLALFVVASQPWR
PEWNKEPPSLLLRGSNNSGHDNHSQFVRETEMQVAIQRLRDYEENSSSCHKEVQILKYQMDNVSSLVQLL
GSHLEDVNADILQTKDVLKESGALALETQALRSSLEVASADIHSLRGDLEKANAMTSQTRGLLKSSTENT
SAELHVLGRGLEEAQSEIQALRGSLQSANDLSSQTQGFLQHSMDNISAQIQTVRDGMERAGEKMNSLKKE
LETLTAQTQKANGHLEQTDAQIQGLKAELKSTSSLNSRIEVVNGQMKDASRELQTLRRDLSDVSALKSNV
QMLQSNLQRAKTEMQSLKADLQATKALTAKIQGEQNRLGALQEAVAAQKQEQKTQNQVLQLIAQNWKYFN
GNFYYFSRDKKPWREAEKFCTSQGAHLASVTSQEEQAFLVQTTSSGDHWIGLTDQGTEGIWRWVDGTPFN
NAQSKGFWGKNQPDNWRHRNGEREDCVHVRQQWNDMACGSSYPWVCKKSTGWSAARVG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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