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Report for CCDS20311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20311.1 Public Mus musculus 6 Pcyox1 23 108 98 CCDS HistoryNCBI Gene:66881Re-query CCDS DB by CCDS ID:20311.1Re-query CCDS DB by GeneID:66881See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20311.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032065.14 ENSMUSP00000032065.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032065.14Link to Ensembl Protein Viewer:ENSMUSP00000032065.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032065Re-query CCDS DB by Protein ID:ENSMUSP00000032065
Original member Current member NCBI NM_025823.4 NP_080099.1 Accepted alive Link to Nucleotide Sequence:NM_025823.4Link to Protein Sequence:NP_080099.1Re-query CCDS DB by Nucleotide ID:NM_025823Re-query CCDS DB by Protein ID:NP_080099Link to BLAST:NP_080099.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080099.1 505 Q9CQF9 505 100% 0 0

Chromosomal Locations for CCDS 20311.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 86388713 86389371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86391676 86391828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86392137 86392348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86394409 86394583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86395914 86396120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86396973 86397084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGGGCGCTTCGCCGCTGCATTGGTGGGCTCACTGTTCTGGCTGGGGCTGCTGCTATGTGGTCTGGGCA
GTCTGGCGAGCGCCGAGCCCCGGGCCCCGCCGAACAGGATCGCAATAGTCGGTGCTGGAATCGGTGGTAC
TTCCTCCGCCTATTATCTAAGGAAGAAATTTGGGAAGGACGTGAAGATTGACGTGTTTGAGAGAGAAGAG
GTCGGGGGCCGTTTGGCCACTTTGAAGGTGCAAGGTCATGACTACGAGGCAGGGGGTTCAGTCATTCACC
CCCTAAATTTGCACATGAAGCGATTTGTCAAAGAGCTGGGTCTCTCCAGTGTTCCCGCTTCAGGTGGCCT
GGTGGGCGTGTACAATGGAAAGTCTCTGGTGTTTGAGGAGAGCAGCTGGTTTGTAATCAACGTGATTAAG
CTGGTGTGGCGCTATGGGTTTCAGTCCCTCAGAATGCACATGTGGGTAGAAGACTTGTTGGACAAGTTCA
TGAGGATCTACCGTTACCAGTCCCATGACTATGCCTTTAGCAGTGTAGAAAAGTTGATGCACGCCATCGG
AGGGGATGACTACGTCAGACTGCTTAACCAAACTCTCCGTGAAAACCTGAAGAAAGCAGGCTTCTCCGAG
ACGTTTCTCAACGAGATGATTGCTCCTGTCATGAAGGTCAATTATGGCCAGAGCACAGACATCAACGCCT
TTGTGGGGGCGGTGTCATTGACGGCTGCCGATTCCAACCTCTGGGCAGTGGAAGGTGGTAATAAAATTGT
TTGCTCGGGGCTCCTTCAGGCCTCTAGCAGCAATCTTATATCTGGCTCCGTAATGTCAATAGAGGAGAAG
ACGAGGACCAAACAGACAGGAAACCCCACCAAGATGTATGAAGTGGTATATAAAACAGGATCTGAGACCC
ATTCTGACTTCTATGACATTGTCCTCGTGGCTGCTCCTTTGAACCGGAAGATGTCCAACATAACTTTCCG
AAATTTTGATCCGCCCATCGAGGAATTCAATGACCCATATCAACAGCTGGTGACAACTTTCATCAAAGGA
GAACTCAATTCCACTCTCTTCAGCTCCAGACCCAAGGATCAGTTTGGCCTCTCGGCAATTCTTGTCACTG
ATGACTCCGATATGTTTATTAACAGTCTGTCCATTGTGGCCTCTGTAAGACAGAAGGAGGGTCCCCCACC
CGCGGTGGATGGCATGCACGTGTGGAAGACCTTCTCCAGGGACATCCTCACCAAAGAACAAATTTCAAAG
CTCTTCCTGTCCTATGATTATGCTGTGCGGAAGCCATGGCTGTCCTATCCTCACTATGAGCCTCCTCAGA
AATGTCCCTCCATCATCCTCCACGACCGGCTCTATTACCTCAATGGCATCGAGTTTGCGGCCAGCTGCAT
GGAAATGAGCGCCATTGCCGGCTACAACGCAGCTCTCCTCGCCTACCACCGCTGGAACGGCAATGAGGAC
ATGATTGATCAGGACGACCTGTATGAAAGGCTTAAGACGGAGCTGTAA

Translation (505 aa):
MGRFAAALVGSLFWLGLLLCGLGSLASAEPRAPPNRIAIVGAGIGGTSSAYYLRKKFGKDVKIDVFEREE
VGGRLATLKVQGHDYEAGGSVIHPLNLHMKRFVKELGLSSVPASGGLVGVYNGKSLVFEESSWFVINVIK
LVWRYGFQSLRMHMWVEDLLDKFMRIYRYQSHDYAFSSVEKLMHAIGGDDYVRLLNQTLRENLKKAGFSE
TFLNEMIAPVMKVNYGQSTDINAFVGAVSLTAADSNLWAVEGGNKIVCSGLLQASSSNLISGSVMSIEEK
TRTKQTGNPTKMYEVVYKTGSETHSDFYDIVLVAAPLNRKMSNITFRNFDPPIEEFNDPYQQLVTTFIKG
ELNSTLFSSRPKDQFGLSAILVTDDSDMFINSLSIVASVRQKEGPPPAVDGMHVWKTFSRDILTKEQISK
LFLSYDYAVRKPWLSYPHYEPPQKCPSIILHDRLYYLNGIEFAASCMEMSAIAGYNAALLAYHRWNGNED
MIDQDDLYERLKTEL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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