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Report for CCDS2040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2040.1 Public Homo sapiens 2 MITD1 24 110 108 CCDS HistoryNCBI Gene:129531Re-query CCDS DB by CCDS ID:2040.1Re-query CCDS DB by GeneID:129531See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 2040.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289359.6 ENSP00000289359.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000289359.6Link to Ensembl Protein Viewer:ENSP00000289359.2Re-query CCDS DB by Nucleotide ID:ENST00000289359Re-query CCDS DB by Protein ID:ENSP00000289359
Original member Current member NCBI NM_138798.3 NP_620153.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138798.3Link to Protein Sequence:NP_620153.1Re-query CCDS DB by Nucleotide ID:NM_138798Re-query CCDS DB by Protein ID:NP_620153Link to BLAST:NP_620153.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620153.1 249 Q8WV92 249 100% 0 0

Chromosomal Locations for CCDS 2040.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 99169375 99169470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99169550 99169610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99170537 99170652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99171343 99171429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99171510 99171646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99173915 99174016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99180831 99180981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGGCGAAGTCCGGGCTGAGGCAGGACCCGCAGAGCACAGCTGCAGCCACTGTGCTAAAGCGGGCAGTAG
AACTAGATTCGGAGTCGCGGTATCCGCAGGCTCTGGTGTGTTACCAAGAGGGGATTGATCTGCTCCTGCA
GGTTCTGAAAGGTACCAAAGATAATACTAAGAGATGTAATCTCAGAGAAAAAATTTCCAAATACATGGAC
AGAGCGGAAAACATAAAGAAGTACTTGGACCAAGAAAAAGAAGATGGAAAATATCACAAGCAAATTAAAA
TAGAAGAGAATGCAACAGGTTTCAGTTATGAGTCACTTTTTCGCGAATACCTTAATGAGACAGTTACAGA
AGTTTGGATAGAAGATCCTTATATTAGACATACTCATCAGCTGTATAACTTTCTTCGATTTTGTGAGATG
CTTATTAAGAGACCATGTAAAGTAAAAACTATTCACCTTCTCACCTCTCTGGATGAAGGCATTGAGCAAG
TGCAGCAAAGTAGAGGCCTGCAAGAAATAGAAGAGTCACTCAGGAGTCACGGAGTGCTGTTGGAAGTTCA
ATACTCTTCTTCAATACATGACCGAGAAATTAGGTTCAACAATGGATGGATGATTAAGATTGGAAGGGGA
CTTGATTATTTTAAGAAACCACAGAGTCGTTTTTCCCTTGGATATTGTGATTTTGATTTAAGACCATGTC
ATGAAACAACAGTAGACATTTTTCATAAGAAGCATACAAAAAATATATGA

Translation (249 aa):
MAKSGLRQDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMD
RAENIKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNFLRFCEM
LIKRPCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMIKIGRG
LDYFKKPQSRFSLGYCDFDLRPCHETTVDIFHKKHTKNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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