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Report for CCDS20508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20508.1 Public Mus musculus 6 Clec4a3 23 108 98 CCDS HistoryNCBI Gene:73149Re-query CCDS DB by CCDS ID:20508.1Re-query CCDS DB by GeneID:73149See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20508.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088468.6 ENSMUSP00000085816.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088468.6Link to Ensembl Protein Viewer:ENSMUSP00000085816.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000088468Re-query CCDS DB by Protein ID:ENSMUSP00000085816
Original member Current member EBI ENSMUST00000117173.7 ENSMUSP00000112716.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117173.7Link to Ensembl Protein Viewer:ENSMUSP00000112716.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117173Re-query CCDS DB by Protein ID:ENSMUSP00000112716
Original member Current member NCBI NM_001204241.1 NP_001191170.1 Accepted alive Link to Nucleotide Sequence:NM_001204241.1Link to Protein Sequence:NP_001191170.1Re-query CCDS DB by Nucleotide ID:NM_001204241Re-query CCDS DB by Protein ID:NP_001191170Link to BLAST:NP_001191170.1
Original member Current member NCBI NM_153197.4 NP_694877.2 Accepted alive Link to Nucleotide Sequence:NM_153197.4Link to Protein Sequence:NP_694877.2Re-query CCDS DB by Nucleotide ID:NM_153197Re-query CCDS DB by Protein ID:NP_694877Link to BLAST:NP_694877.2

Chromosomal Locations for CCDS 20508.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 122952868 122952949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122954036 122954152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122964247 122964348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122966422 122966576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122967453 122967565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122969368 122969512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGTTTTCAGAAAACATTTATGTTAACACGAACTTCAAAAATAAAGTTGACTCCTCAGACATCGACACAG
ACTCTTGGCCAGCTCCCCAAAGGAAGAACACGTCTCAGAAAAGTTGTCACAAATTCTCTAAGGTCCTCTT
TACCTCACTCATAATCTATTTCCTGCTGTTGACAATCTTATTCTCCGGTGCTCTGATCACTTTGTTTACA
AAATATTCTCAGCTTCTTGAAGAAAAAATGATTATAAAAGAACTGAACTATACTGAATTGGAGTGTACAA
AATGGGCTTCACTCTTGGAAGACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAAGCCGTTTGGTTCCTA
CTGCTACTTCACTTCAACTGACTTGGTGGCATCTTGGAATGAGAGTAAGGAGAACTGCTTCCACATGGGT
GCTCATCTGGTGGTGATCCACAGCCAGGAAGAACAGGATTTCATCACTGGGATCCTGGACACTGGTACTG
CTTATTTTATAGGACTTTCAAATCCAGGTGATCAACAATGGCAATGGATTGATCAGACACCGTACGATGA
TAATACCACATTCTGGCACAAAGGTGAGCCTAGCAGTGACAATGAACAGTGTGTTATAATAAATCATCGT
CAGAGTACTGGATGGGGCTGGAGTGATATCCCTTGCAGTGATAAACAGAACTCAATTTGCCATGTGAAAA
AAATATACTTATGA

Translation (237 aa):
MFSENIYVNTNFKNKVDSSDIDTDSWPAPQRKNTSQKSCHKFSKVLFTSLIIYFLLLTILFSGALITLFT
KYSQLLEEKMIIKELNYTELECTKWASLLEDKVWSCCPKDWKPFGSYCYFTSTDLVASWNESKENCFHMG
AHLVVIHSQEEQDFITGILDTGTAYFIGLSNPGDQQWQWIDQTPYDDNTTFWHKGEPSSDNEQCVIINHR
QSTGWGWSDIPCSDKQNSICHVKKIYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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