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Report for CCDS20558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20558.1 Public Mus musculus 6 Akap3 23 108 98 CCDS HistoryNCBI Gene:11642Re-query CCDS DB by CCDS ID:20558.1Re-query CCDS DB by GeneID:11642See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20558.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095440.8 ENSMUSP00000093091.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095440.8Link to Ensembl Protein Viewer:ENSMUSP00000093091.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000095440Re-query CCDS DB by Protein ID:ENSMUSP00000093091
Original member Current member EBI ENSMUST00000202878.3 ENSMUSP00000143794.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202878.3Link to Ensembl Protein Viewer:ENSMUSP00000143794.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202878Re-query CCDS DB by Protein ID:ENSMUSP00000143794
Original member Current member EBI ENSMUST00000202574.1 ENSMUSP00000144405.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202574.1Link to Ensembl Protein Viewer:ENSMUSP00000144405.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202574Re-query CCDS DB by Protein ID:ENSMUSP00000144405
Original member Current member NCBI NM_009650.2 NP_033780.2 Accepted alive Link to Nucleotide Sequence:NM_009650.2Link to Protein Sequence:NP_033780.2Re-query CCDS DB by Nucleotide ID:NM_009650Re-query CCDS DB by Protein ID:NP_033780Link to BLAST:NP_033780.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033780.2 864 O88987 864 100% 0 0

Chromosomal Locations for CCDS 20558.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 126860255 126860350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126864516 126866858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126873960 126874115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2595 nt):
ATGGCGGATAGGGTTGACTGGTTACAAAGTCAAAGTGGCGTTTGCAAAGTTGGTGTCTATTCACCTGGAG
ACAACCAACACCAAGACTGGAAAATGGACACATCAACAGATCCTGTCCGAGTGCTCAGCTGGCTCCGCAA
AGACCTGGAGAAAAGTACAGCGGGCTTCCAGGACTCGAGGTTCAAGCCTGGAGAGTCATCGTTTGTGGAG
GAAGTGGCTTACCCAGTGGACCAACGAAAAGGTTTCTGTGTTGATTATTACAATACCACCAACAAGGGCA
GTCCAGGAAGATTGCATTTTGAGATGTCTCACAAGGAGAACCCTTCCCAGGGCCTCATTTCCCATGTTGG
TAATGGGGGTTCCATAGACGAAGTTTCCTTCTATGCCAACCGCCTCACAAACCTAGTGATCGCCATGGCC
CGAAAGGAGATCAATGAGAAGATCCACGGCGCTGAAAACAAATGTGTCCATCAGTCATTGTATATGGGGG
ATGAGCCCACACCCCACAAAAGCTTGAGTACAGTGGCCTCTGAGCTCGTGAACGAGACAGTCACCGCATG
TTCCAAGAACATTTCCAGTGACAAAGCTCCCGGCTCTGGAGACAGGGCCTCGGGGTCGTCACAGGCCCCT
GGTCTAAGATACACGAGCACTCTGAAGATCAAGGAGAGTACAAAGGAAGGCAAGTGTCCAGACGACAAGC
CCGGCACTAAGAAGTCTTTCTTCTATAAGGAAGTGTTTGAGTCCCGGAATGCAGGAGATGCCAAGGAGGG
CGGGAGGTCCTTACCAGGAGATCAAAAACTGTTCAGGACCAGCCCCGACAACAGGCCTGATGACTTTTCA
AACTCTATCAGTCAAGGGATCATGACCTACGCCAACAGCGTGGTGTCTGACATGATGGTCTCCATCATGA
AGACGCTGAAGATCCAGGTGAAGGACACAACCATCGCCACGATTCTGCTGAAGAAGGTGCTGATGAAGCA
CGCAAAGGAGGTTGTCTCCGACCTCATCGACTCCTTCATGAAGAACCTCCACGGCGTCACGGGAAGCCTC
ATGACTGACACAGACTTTGTCTCGGCCGTGAAACGAAGTTTTTTTTCTCATGGAAGCCAAAAGGCCACAG
ATATCATGGATGCCATGCTGGGCAAGCTATACAATGTGATGTTTGCCAAGAAATTCCCTGAGAACATCCG
GAGAGCCAGGGACAAGTCGGAGAGTTACTCCCTTATCTCCACGAAATCACGGGCTGGTGACCCAAAGCTC
TCAAATTTGAACTTTGCGATGAAGTCAGAATCAAAGCTGAAAGAAAATTTGTTTTCTACATGCAAACTAG
AGAAAGAGAAGACGTGTGCCGAAACTCTGGGTGAGCATATTATTAAGGAGGGACTGCACATGTGGCACAA
GAGTCAGCAAAAATCTCCTGGCTTGGAGCGTGCCGCAAAACTGGGTAACGCTCCACAGGAGGTCTCCTTT
GAGTGCCCAGATCCTTGTGAGGCAAACCCTCCTCACCAACCTCAGCCACCAGAGAATTTTGCAAATTTTA
TGTGTGACTCAGACTCCTGGGCCAAGGACCTGATTGTATCCGCCCTGCTTCTGATTCAGTATCACCTGGC
ACAGGGAGGAAAGATGGATGCTCAGAGCTTCCTGGAAGCTGCTGCCAGCACCAATTTTCCCACCAACAAG
CCACCTCCTCCTTCTCCTGTAGTTCAGGATGAGTGCAAACTTAAGTCTCCTCCCCACAAGATATGTGACC
AAGAACAAACAGAAAAGAAAGATCTGATGAGTGTCATCTTCAATTTTATCCGGAACTTACTCAGCGAGAC
CATATTCAAGAGTAGCCGTAACTGTGAATCCAATGTGCATGAGCAGAACACTCAGGAAGAAGAGATACAC
CCGTGTGAAAGGCCTAAGACTCCATGTGAAAGGCCTATTACCCCGCCTGCCCCGAAATTCTGTGAGGATG
AGGAGGCCACTGGTGGTGCCTTATCTGGGCTAACCAAGATGGTTGCCAACCAGCTAGACAACTGTATGAA
TGGGCAGATGGTGGAGCACCTGATGGACTCGGTGATGAAGTTATGCCTCATTATTGCCAAGTCCTGTGAC
TCTCCCCTGTCGGAGCTGGGAGAGGAAAAGTGTGGGGATGCCAGCCGGCCAAATTCTGCCTTCCCAGATA
ACTTATATGAGTGCCTACCAGTCAAGGGCACAGGGACAGCTGAAGCCCTCCTGCAGAACGCCTACCTCAC
CATCCATAATGAACTGAGAGGTTTGTCAGGACAGCCCCCCGAGGGCTGTGAAATCCCCAAGGTGATCGTC
AGCAACCACAATCTGGCTGACACCGTTCAGAACAAGCAACTGCAAGCTGTCCTTCAGTGGGTGGCTGCCT
CAGAGCTCAATGTCCCTATTTTGTACTTTGCTGGTGACGATGAAGGAATCCAGGAGAAGCTGCTTCAGCT
CTCAGCCACTGCCGTGGAGAAAGGCCGCAGCGTCGGGGAGGTTCTGCAGTCGGTGCTGAGGTACGAGAAG
GAGCGACAGCTGGATGAAGCAGTGGGAAATGTCACGCGGCTGCAGCTGCTGGACTGGCTGATGGCAAACC
TGTGA

Translation (864 aa):
MADRVDWLQSQSGVCKVGVYSPGDNQHQDWKMDTSTDPVRVLSWLRKDLEKSTAGFQDSRFKPGESSFVE
EVAYPVDQRKGFCVDYYNTTNKGSPGRLHFEMSHKENPSQGLISHVGNGGSIDEVSFYANRLTNLVIAMA
RKEINEKIHGAENKCVHQSLYMGDEPTPHKSLSTVASELVNETVTACSKNISSDKAPGSGDRASGSSQAP
GLRYTSTLKIKESTKEGKCPDDKPGTKKSFFYKEVFESRNAGDAKEGGRSLPGDQKLFRTSPDNRPDDFS
NSISQGIMTYANSVVSDMMVSIMKTLKIQVKDTTIATILLKKVLMKHAKEVVSDLIDSFMKNLHGVTGSL
MTDTDFVSAVKRSFFSHGSQKATDIMDAMLGKLYNVMFAKKFPENIRRARDKSESYSLISTKSRAGDPKL
SNLNFAMKSESKLKENLFSTCKLEKEKTCAETLGEHIIKEGLHMWHKSQQKSPGLERAAKLGNAPQEVSF
ECPDPCEANPPHQPQPPENFANFMCDSDSWAKDLIVSALLLIQYHLAQGGKMDAQSFLEAAASTNFPTNK
PPPPSPVVQDECKLKSPPHKICDQEQTEKKDLMSVIFNFIRNLLSETIFKSSRNCESNVHEQNTQEEEIH
PCERPKTPCERPITPPAPKFCEDEEATGGALSGLTKMVANQLDNCMNGQMVEHLMDSVMKLCLIIAKSCD
SPLSELGEEKCGDASRPNSAFPDNLYECLPVKGTGTAEALLQNAYLTIHNELRGLSGQPPEGCEIPKVIV
SNHNLADTVQNKQLQAVLQWVAASELNVPILYFAGDDEGIQEKLLQLSATAVEKGRSVGEVLQSVLRYEK
ERQLDEAVGNVTRLQLLDWLMANL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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