NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2073.1 Public Homo sapiens 2 ST6GAL2 24 110 108 CCDS HistoryNCBI Gene:84620Re-query CCDS DB by CCDS ID:2073.1Re-query CCDS DB by GeneID:84620See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2073.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361686.8 ENSP00000355273.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361686.8Link to Ensembl Protein Viewer:ENSP00000355273.4Re-query CCDS DB by Nucleotide ID:ENST00000361686Re-query CCDS DB by Protein ID:ENSP00000355273
Original member Current member EBI ENST00000409382.8 ENSP00000386942.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409382.8Link to Ensembl Protein Viewer:ENSP00000386942.3Re-query CCDS DB by Nucleotide ID:ENST00000409382Re-query CCDS DB by Protein ID:ENSP00000386942
Original member Current member NCBI NM_001142351.2 NP_001135823.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001142351.2Link to Protein Sequence:NP_001135823.1Re-query CCDS DB by Nucleotide ID:NM_001142351Re-query CCDS DB by Protein ID:NP_001135823Link to BLAST:NP_001135823.1
Original member Current member NCBI NM_001322362.2 NP_001309291.1 Accepted alive Link to Nucleotide Sequence:NM_001322362.2Link to Protein Sequence:NP_001309291.1Re-query CCDS DB by Nucleotide ID:NM_001322362Re-query CCDS DB by Protein ID:NP_001309291Link to BLAST:NP_001309291.1
Original member Current member NCBI NM_032528.3 NP_115917.1 Accepted alive Link to Nucleotide Sequence:NM_032528.3Link to Protein Sequence:NP_115917.1Re-query CCDS DB by Nucleotide ID:NM_032528Re-query CCDS DB by Protein ID:NP_115917Link to BLAST:NP_115917.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135823.1 529 Q96JF0-1 529 100% 0 0
NP_001309291.1 529 Q96JF0-1 529 100% 0 0
NP_115917.1 529 Q96JF0-1 529 100% 0 0

Chromosomal Locations for CCDS 2073.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 106806678 106806949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 106830066 106830240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 106832565 106832666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 106834049 106834146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 106843035 106843977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGAAACCACACTTGAAGCAATGGAGACAACGAATGCTTTTCGGAATATTCGCTTGGGGGCTCCTCTTTT
TGCTGATTTTCATCTACTTCACCGACAGCAACCCCGCTGAGCCTGTACCCAGCTCCCTCTCCTTCCTGGA
GACCAGGAGGCTCCTGCCGGTGCAGGGGAAGCAGCGGGCCATCATGGGCGCCGCACATGAGCCCTCCCCG
CCTGGGGGCCTGGACGCACGCCAGGCGCTGCCCCGCGCCCACCCAGCCGGTTCCTTTCATGCGGGGCCTG
GAGACCTGCAGAAATGGGCCCAGTCCCAAGATGGGTTTGAACATAAAGAGTTTTTTTCATCCCAGGTGGG
GAGAAAATCTCAAAGTGCTTTCTACCCGGAGGATGACGACTACTTTTTTGCTGCTGGTCAGCCAGGGTGG
CACAGCCACACTCAGGGGACATTGGGATTCCCTTCCCCCGGGGAGCCAGGCCCACGGGAGGGGGCTTTTC
CGGCTGCACAGGTCCAGAGGAGGCGGGTGAAGAAGAGGCACCGGAGGCAGAGAAGGAGCCACGTGTTGGA
GGAGGGCGACGACGGCGACAGGCTGTACTCCTCCATGTCCAGGGCCTTCCTGTACCGGCTCTGGAAGGGG
AACGTCTCTTCCAAAATGCTGAACCCGCGCCTGCAGAAGGCGATGAAGGATTACCTGACCGCCAACAAGC
ACGGGGTGCGCTTCCGCGGGAAGCGGGAGGCCGGGCTGAGCAGGGCACAGCTGCTGTGCCAGCTGCGGAG
CCGCGCGCGCGTGCGGACGCTGGACGGCACCGAGGCGCCCTTTTCTGCGCTGGGCTGGCGGCGCCTGGTG
CCCGCCGTGCCCCTGAGCCAGCTGCACCCCCGCGGCCTGCGCAGCTGCGCTGTCGTCATGTCTGCAGGCG
CAATCCTCAACTCTTCCTTGGGCGAGGAAATAGATTCTCATGATGCGGTTTTGAGATTTAACTCTGCTCC
TACACGTGGTTATGAGAAAGATGTTGGGAATAAAACCACCATACGCATCATTAATTCGCAGATTCTGACC
AACCCCAGCCATCACTTCATTGACAGTTCACTGTATAAAGACGTCATTTTGGTGGCCTGGGACCCTGCCC
CATATTCCGCAAATCTTAACCTGTGGTACAAAAAACCGGATTACAACCTGTTCACTCCATATATTCAGCA
TCGTCAGAGAAACCCAAATCAGCCATTTTACATTCTTCATCCTAAATTTATATGGCAGCTCTGGGATATT
ATCCAGGAGAACACTAAAGAGAAGATTCAACCAAACCCACCATCTTCTGGTTTCATTGGAATCCTCATAA
TGATGTCCATGTGCAGAGAGGTGCACGTGTATGAATATATCCCATCCGTGCGGCAGACGGAGCTGTGCCA
CTACCACGAGCTGTACTACGACGCAGCCTGCACCCTCGGGGCGTACCACCCACTACTCTATGAGAAGCTC
CTGGTGCAGCGCCTGAACATGGGCACGCAGGGGGATTTGCATCGCAAGGGCAAGGTGGTTCTTCCCGGCT
TCCAGGCGGTGCACTGCCCTGCACCAAGTCCAGTCATTCCACACTCTTAA

Translation (529 aa):
MKPHLKQWRQRMLFGIFAWGLLFLLIFIYFTDSNPAEPVPSSLSFLETRRLLPVQGKQRAIMGAAHEPSP
PGGLDARQALPRAHPAGSFHAGPGDLQKWAQSQDGFEHKEFFSSQVGRKSQSAFYPEDDDYFFAAGQPGW
HSHTQGTLGFPSPGEPGPREGAFPAAQVQRRRVKKRHRRQRRSHVLEEGDDGDRLYSSMSRAFLYRLWKG
NVSSKMLNPRLQKAMKDYLTANKHGVRFRGKREAGLSRAQLLCQLRSRARVRTLDGTEAPFSALGWRRLV
PAVPLSQLHPRGLRSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQILT
NPSHHFIDSSLYKDVILVAWDPAPYSANLNLWYKKPDYNLFTPYIQHRQRNPNQPFYILHPKFIWQLWDI
IQENTKEKIQPNPPSSGFIGILIMMSMCREVHVYEYIPSVRQTELCHYHELYYDAACTLGAYHPLLYEKL
LVQRLNMGTQGDLHRKGKVVLPGFQAVHCPAPSPVIPHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH