NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21039.1 Public Mus musculus 7 Timm50 23 108 98 CCDS HistoryNCBI Gene:66525Re-query CCDS DB by CCDS ID:21039.1Re-query CCDS DB by GeneID:66525See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21039.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081946.4 ENSMUSP00000080614.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081946.4Link to Ensembl Protein Viewer:ENSMUSP00000080614.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000081946Re-query CCDS DB by Protein ID:ENSMUSP00000080614
Original member NCBI NM_025616.3 NP_079892.1 Updated not alive Link to Nucleotide Sequence:NM_025616.3Link to Protein Sequence:NP_079892.1Re-query CCDS DB by Nucleotide ID:NM_025616Re-query CCDS DB by Protein ID:NP_079892
Current member NCBI NM_025616.4 NP_079892.1 Accepted alive Link to Nucleotide Sequence:NM_025616.4Link to Protein Sequence:NP_079892.1Re-query CCDS DB by Nucleotide ID:NM_025616Re-query CCDS DB by Protein ID:NP_079892Link to BLAST:NP_079892.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079892.1 353 Q9D880 353 100% 0 0

Chromosomal Locations for CCDS 21039.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28305929 28306030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28306423 28306529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28306822 28306978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28307553 28307651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28307745 28307849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28308148 28308267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28308354 28308412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28310079 28310100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28310296 28310327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28310869 28311019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28311925 28312032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGCGGCCTCGGCGGCTCTGTTCTCGCGCTTGCGGAGCGGGCTCCGGGTAGGCGCGCGGGGGCTGTGCA
CGCGGCTAGCGCCGCCACCTCCCCGCACTCCCGAGCAGGTCACTGAAATTGCCAACCGTGGGGGCTCCAA
GGCCCAGGGGCCACAGCACCAGCCAGGCTCCGAGGGTCCCAGCTATGCCAAAAAAATTGCGCTCTGGATC
GCCGGTTTGCTCGGAGCTGGTGGGACTGTCAGCATCGTCTATATTTTTGGAAACAACCCTGTGGATGAAA
ATGGTACCAAGATTCCTGATGAATTCGACAGCGATCCAATTCTGGTTCAGCAGTTGCGCCGGACATACAA
ATACTTCAAAGATTACAGACAGATGATCATCGAGCCCACCAGTCCCTGCCTTCTCCCAGACCCTCTGCGG
GAGCCCTACTACCAGCCACCTTATACACTGGTCCTGGAGCTTACCGGGGTCCTTCTGCACCCAGAGTGGT
CGCTGGCCACTGGCTGGAGGTTTAAGAAGCGTCCAGGCATCGAGACCTTGTTCCAGCAGCTTGCCCCTCT
GTATGAAATAGTCATCTTCACATCAGAGACTGGCATGACTGCATTTCCACTCATTGATAGTGTGGACCCT
CACGGTTTCATCTCCTACCGTCTGTTCCGGGACGCCACCAGATATATGGAGGGACATCATGTGAAGGACA
TCTCCTGTCTGAATCGGGACCCAGCCCGAGTAGTAGTCGTGGACTGCAAGAAGGAAGCTTTCCGCCTCCA
GCCCTTCAACGGTGTTGCCCTGCGGCCCTGGGATGGCAACTCAGATGACCGGGTCTTGCTGGACCTGTCT
GCCTTCCTCAAGACCATTGCACTGAACCAAGTGGAGGACGTCCGGACGGTGCTGGAGCACTATGCTCTAG
AGGATGACCCACTGGAGGCATTCAAACAGCGGCAGAGCCGGCTTGAGCAGGAGGAGCAGCAGCGCCTGGC
CGAGCTCTCCAAGTCCAACAGGCAGGGCCTCTCCTTTGGCTCACTCGCCAGCCGACTGTGGCCTCGCTCC
AAGCAGCCCTGA

Translation (353 aa):
MAASAALFSRLRSGLRVGARGLCTRLAPPPPRTPEQVTEIANRGGSKAQGPQHQPGSEGPSYAKKIALWI
AGLLGAGGTVSIVYIFGNNPVDENGTKIPDEFDSDPILVQQLRRTYKYFKDYRQMIIEPTSPCLLPDPLR
EPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDP
HGFISYRLFRDATRYMEGHHVKDISCLNRDPARVVVVDCKKEAFRLQPFNGVALRPWDGNSDDRVLLDLS
AFLKTIALNQVEDVRTVLEHYALEDDPLEAFKQRQSRLEQEEQQRLAELSKSNRQGLSFGSLASRLWPRS
KQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH