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Report for CCDS2117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2117.1 Public Homo sapiens 2 FOXD4L1 24 110 108 CCDS HistoryNCBI Gene:200350Re-query CCDS DB by CCDS ID:2117.1Re-query CCDS DB by GeneID:200350See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2117.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306507.7 ENSP00000302756.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306507.7Link to Ensembl Protein Viewer:ENSP00000302756.5Re-query CCDS DB by Nucleotide ID:ENST00000306507Re-query CCDS DB by Protein ID:ENSP00000302756
Original member Current member NCBI NM_012184.5 NP_036316.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012184.5Link to Protein Sequence:NP_036316.1Re-query CCDS DB by Nucleotide ID:NM_012184Re-query CCDS DB by Protein ID:NP_036316Link to BLAST:NP_036316.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036316.1 408 Q9NU39 408 100% 0 0

Chromosomal Locations for CCDS 2117.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 113499257 113500483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1227 nt):
ATGAACCTGCCAAGAGCTGAGCGCCCTCGCTCCACACCGCAGCGCAGCCTCCGGGACTCCGATGGGGAAG
ACGGTAAAATCGATGTCCTGGGAGAGGAGGAAGATGAAGACGAGGTGGAAGACGAGGAGGAGGAGGCGAG
CCAGAAGTTCCTAGAGCAGTCGCTCCAGCCGGGGCTGCAGGTGGCCCGGTGGGGCGGGGTTGCGCTTCCC
CGAGAGCACATCGAGGGCGGCGGCCCGAGCGACCCCTCAGAGTTTGGCACCGAGTTCAGGGCACCGCCAA
GGTCTGCGGCGGCCTCTGAAGATGCCCGGCAGCCGGCAAAGCCCCCCTACTCGTACATCGCGCTCATCAC
CATGGCCATCCTGCAAAGCCCGCACAAGCGCCTCACGCTCAGCGGCATCTGCGCCTTCATTAGTGGCCGC
TTCCCCTACTACCGCCGCAAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCGCTGAACGACT
GCTTCGTCAAGATCCCCCGCGAGCCGGGCCACCCAGGCAAGGGCACCTACTGGAGCCTGGACCCCGCCTC
CCAGGACATGTTCGACAATGGCAGCTTTCTCCGGCGTAGGAAGCGTTTCAAGCGCCACCAACTGACCCCG
GGAGCCCACCTGCCCCACCCCTTCCCTCTACCTGCTGCACACGCCGCCCTGCACAACCCCCGCCCAGGCC
CTCTGCTTGGGGCCCCTGCCCTGCCGCAGCCAGTCCCGGGGGCCTACCCCAACACCGCCCCCGGGAGACG
CCCTTACGCTCTGCTGCACCCGCATCCTCCTCGCTACCTACTGCTCTCGGCCCCCGCCTATGCCGGGGCA
CCGAAGAAAGCAGAAGGCGCGGACCTGGCGACCCCCGGCACCCTTCCCGTGCTGCAGCCCTCACTTGGTC
CTCAGCCTTGGGAGGAGGGCAAGGGTCTGGCGTCGCCACCGGGAGGCGGATGCATCTCTTTCAGCATTGA
GAGTATCATGCAAGGGGTCAGGGGAGCGGGTACAGGGGCTGCGCAGAGTTTGTCCCCGACCGCGTGGAGC
TACTGCCCCCTGCTCCAGCGACCGTCAAGCCTGTCGGACAATTTTGCAGCAACAGCAGCAGCATCAGGAG
GAGGACTGCGCCAACGGCTGCGCTCCCACCAAGGGCGCGGTGCTGGGCGGGCACCTGTCGGCCGCGTCGG
CGCTGCTGCGGTATCAGGCGGTGGCAGAGGGCTCTAG

Translation (408 aa):
MNLPRAERPRSTPQRSLRDSDGEDGKIDVLGEEEDEDEVEDEEEEASQKFLEQSLQPGLQVARWGGVALP
REHIEGGGPSDPSEFGTEFRAPPRSAAASEDARQPAKPPYSYIALITMAILQSPHKRLTLSGICAFISGR
FPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGTYWSLDPASQDMFDNGSFLRRRKRFKRHQLTP
GAHLPHPFPLPAAHAALHNPRPGPLLGAPALPQPVPGAYPNTAPGRRPYALLHPHPPRYLLLSAPAYAGA
PKKAEGADLATPGTLPVLQPSLGPQPWEEGKGLASPPGGGCISFSIESIMQGVRGAGTGAAQSLSPTAWS
YCPLLQRPSSLSDNFAATAAASGGGLRQRLRSHQGRGAGRAPVGRVGAAAVSGGGRGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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