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Report for CCDS21361.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21361.1 Public Mus musculus 7 Mctp2 23 108 98 CCDS HistoryNCBI Gene:244049Re-query CCDS DB by CCDS ID:21361.1Re-query CCDS DB by GeneID:244049See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21361.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079323.7 ENSMUSP00000078302.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079323.7Link to Ensembl Protein Viewer:ENSMUSP00000078302.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079323Re-query CCDS DB by Protein ID:ENSMUSP00000078302
Original member Current member NCBI NM_001024703.1 NP_001019874.1 Accepted alive Link to Nucleotide Sequence:NM_001024703.1Link to Protein Sequence:NP_001019874.1Re-query CCDS DB by Nucleotide ID:NM_001024703Re-query CCDS DB by Protein ID:NP_001019874Link to BLAST:NP_001019874.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019874.1 878 Q5RJH2 878 100% 0 0

Chromosomal Locations for CCDS 21361.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 72080789 72080857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72083087 72083184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72090171 72090280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72103144 72103253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72121698 72121739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72127138 72127260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72161140 72161259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72163198 72163272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72164610 72164711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72183805 72183907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72185763 72185865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72200346 72200439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72202289 72202475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72211595 72211725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72213944 72214108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72224021 72224056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72227980 72228091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72228472 72228548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72229328 72229470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72245461 72245569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72247108 72247170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72259099 72259563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2637 nt):
ATGGATCTGGATAAACCATCTGTCTGGGGATCATTAAAACAGCGAACCAGACCTTTGTTAATCAACCTAA
GCAAGAAGAAGGCTAAAAAGAGCCCAAGCAAACCTTTGGATTTAAGGGTGCAGCATCACCTGGACAGGCG
CCTCAGCCTCTCAGTGCCTGACCTCCTGGAAGCAGAGGCTTTGGCCCCTGAAGGCCGGCCTTACTCGGGG
CCCCAGTCATCCTACATCTCAGTACCCAACAGCCTGTCCACTGCAGGCATTGTCCCGAAGAGCAGCAGCA
GCTCACTGAAGCAGTCTGAGGAAGAACTGGACTGGAGCCAGGAGGAAGCAAGCCATGTCCACGGGGTGGA
CACCGACTCTGAAGAGATCTATGCCTCTCCCGCAGAAGAGTGGCAGGCATTCAGCCAGAGTGCCCTGGAT
CTGCACAAACCTTCCCTTGGAAGAGATGCTCCCGAAGAGCACGACAAGACTCACGGCAATGACGATCTGA
ATGCTTCTATGACATCGCAGCATTTTGAAGAAGAATCTACTCTTGGAGAAGCCAGTGATTGTGTGAGTCA
CCTCCCCAGCCCCTTCGCGTACCTCCTCACCATACACCTGAAGGAAGGCCGCAACCTCGTGGTCCGGGAT
CGCTGTGGCACGAGCGATCCGTATGTGAAATTTAAGCTGAATGGGAAGACACTGTACAAAAGTAAAGTGA
TATATAAGAACTTGAACCCAATTTGGGATGAGATAGTTGTGTTGCCAATACAAAGCCTTGATCAAAAGCT
CCGTGTGAAGGTGTATGATCGAGACTTAACCAAGTCTGATTTCATGGGTTCTGCATTTGTCGTTCTCAGA
GATCTTGAACTTAACAGGACTACAGAGCACATTTTAAAATTGGAAGATCCAAACAGTTTAGAAGACGACA
TGGGAGTGATTGTGTTAAATTTGAACCTAGTTGTAAAACAGGGTGATTTCAAGAGGCATCGTTGGTCAAA
TCGGAAGCGGTTAAGTGCCAGCAAGTCCTCCTTGATCCGCAACCTACGCCTCTCAGAGTCCCTTCGGAAG
AACCAACTCTGGAATGGGATTATAAGTATAACTCTCTTGGAAGGAAAGAATGTCTCAGGAGGGAACATGA
CAGAGATGTTTGTCCAGTTAAAACTGGGAGAGCAGAGGTACAAAAGCAAGACACTGTGTAAGAGTGCAAA
TCCGCAGTGGCAGGAACAGTTTGACTTTCACTACTTCTCTGACAGGATGGGCATTTTGGACATTGAAGTG
TGGGGAAAGGACAGCAAAAAGCATGAGGAGCGACTGGGCACGTGTAAAGTAGATATCTCAGCGCTCCCAC
TGAAGCAAGACAATTGCTTGGAGCTGCCTCTGGAGAGCTGCCAGGGGGCTCTCCTCATGTTGATCACCCT
GACCCCATGCACTGGAGTCTCCATCTCTGATCTCTGTGTCTGCCCTTTCGAGGATCCCAGTGAAAGACAG
CAGATTTCCCAGCGATATGCCTTCCAGAACTCTCTGAAGGATGTGAAGGATGTGGGGATTCTACAGGTGA
AGGTTCTGAAGGCCTCGGACCTCCTGGCCGCTGATTTCTCAGGGAAGAGTGATCCTTTCTGCCTATTGGA
GTTGGGCAATGACCGACTTCAGACACATACCATTTACAAAAACCTCAATCCTGAGTGGAACAAAGTTTTT
ACATTCCCCATTAAAGATATCCATGATGTGCTGGAAGTGACAGTGTTTGATGAGGATGGAGACAAGGCCC
CGGACTTTCTTGGAAAAGTCGCCATCCCCTTGCTGTCTATTAGAGATGGACAACCAAACTGTTATGTGTT
GAAGAATAAAGACTTAGAGCAAGCTTTTAAAGGGCTTATTTACTTAGAGTTGGACCTCATATATAATCCG
GTCAAAGCAAGTATCAGGACCTTCACTCCAAGAGAAAAACGCTTTGTGGAAGACAGCCGCAAGCTGTCCA
AAAAGATATTATCAAGAGATGTAGACCGTGTAAAAAGACTCACTTTGGCAATATGGAACACAGTACAGTT
CTTCAAAAGCTGCTTCCAATGGGAGTCTACATTAAGGAGTACAATAGCATTTGTGGTGTTTTTGGTCACC
GTCTGGAATTTTGAACTCTACATGATCCCTCTGGCATTGTTGCTACTCTTTCTGTACAACTTCCTCAGAC
CCATGAAAGGGAAAGCCAGCAGCACCCAGGACAGCCAGGAAAGCACAGACGTAGAGGAGGAAGGGAAAGA
GGAAGAAAAGGAGTCTGAGAAAAAGGGGATAATCGAGAGAATCTATATGGTCCAGGATATTGTTTCCACT
GTCCAGAACATCTTGGAGGAAGTTGCTTCTTTTGGAGAAAGGATTAAGAACGTGTTTAACTGGACAGTCC
CCTTCCTTTCGCTGCTCGCCTGTTTGATTCTGGCCATAACCACTGTCATTTTGTATTTCATCCCTCTACG
GTATATCATTCTACTCTGGGGCATAAATAAATTTACTAAGAAGCTTCGAAATCCTTATTCCATCGACAAT
AATGAGCTACTAGACTTTCTCTCCAGGGTGCCCTCTGACATTCAGAAGGTGCAGTATGCAGAGCTGAAGC
TCTGTGGCAGCCACAGCCCACTTCGGAAGAAGAGGAGTACTGTCTAG

Translation (878 aa):
MDLDKPSVWGSLKQRTRPLLINLSKKKAKKSPSKPLDLRVQHHLDRRLSLSVPDLLEAEALAPEGRPYSG
PQSSYISVPNSLSTAGIVPKSSSSSLKQSEEELDWSQEEASHVHGVDTDSEEIYASPAEEWQAFSQSALD
LHKPSLGRDAPEEHDKTHGNDDLNASMTSQHFEEESTLGEASDCVSHLPSPFAYLLTIHLKEGRNLVVRD
RCGTSDPYVKFKLNGKTLYKSKVIYKNLNPIWDEIVVLPIQSLDQKLRVKVYDRDLTKSDFMGSAFVVLR
DLELNRTTEHILKLEDPNSLEDDMGVIVLNLNLVVKQGDFKRHRWSNRKRLSASKSSLIRNLRLSESLRK
NQLWNGIISITLLEGKNVSGGNMTEMFVQLKLGEQRYKSKTLCKSANPQWQEQFDFHYFSDRMGILDIEV
WGKDSKKHEERLGTCKVDISALPLKQDNCLELPLESCQGALLMLITLTPCTGVSISDLCVCPFEDPSERQ
QISQRYAFQNSLKDVKDVGILQVKVLKASDLLAADFSGKSDPFCLLELGNDRLQTHTIYKNLNPEWNKVF
TFPIKDIHDVLEVTVFDEDGDKAPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGLIYLELDLIYNP
VKASIRTFTPREKRFVEDSRKLSKKILSRDVDRVKRLTLAIWNTVQFFKSCFQWESTLRSTIAFVVFLVT
VWNFELYMIPLALLLLFLYNFLRPMKGKASSTQDSQESTDVEEEGKEEEKESEKKGIIERIYMVQDIVST
VQNILEEVASFGERIKNVFNWTVPFLSLLACLILAITTVILYFIPLRYIILLWGINKFTKKLRNPYSIDN
NELLDFLSRVPSDIQKVQYAELKLCGSHSPLRKKRSTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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