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Report for CCDS21968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21968.1 Public Mus musculus 7 Or6f2 23 108 98 CCDS HistoryNCBI Gene:258511Re-query CCDS DB by CCDS ID:21968.1Re-query CCDS DB by GeneID:258511See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21968.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055890.5 ENSMUSP00000052678.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055890.5Link to Ensembl Protein Viewer:ENSMUSP00000052678.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000055890Re-query CCDS DB by Protein ID:ENSMUSP00000052678
Original member Current member NCBI NM_146518.1 NP_666729.1 Accepted alive Link to Nucleotide Sequence:NM_146518.1Link to Protein Sequence:NP_666729.1Re-query CCDS DB by Nucleotide ID:NM_146518Re-query CCDS DB by Protein ID:NP_666729Link to BLAST:NP_666729.1

Chromosomal Locations for CCDS 21968.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140176104 140177057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGTCCTCAAAATACTTAATGGCTTGGAGTACTGGCCAGAACCTGTCCACACCAGGACCATTCATCTTGC
TGGGCTTCCCGGGGCCAAGGAGCATGCGCATTGGGCTCTTCCTGCTTTTCCTGGTCATGTATCTGCTTAC
AGTAGCTGGAAACCTGGCCATCATCTCCCTGGTGGGTGCCCACAGATGCCTACAGACACCAATGTACTTC
TTCCTCTGCAACCTCTCCTTCCTGGAGATCTGGTTCACCACAGCCTGCGTGCCCAAGACCCTGGCCACGT
TTGCTCCCCGGGGTGGAGCCATCTCCTTGGCTGGCTGTGCCACACAGATGTACTTCGTCTTTTCTCTGGG
CTGTACCGAGTATTTCCTGCTGGCTGTGATGGCTTATGACCGCTACCTGGCCATCTGCCTGCCACTGCGC
TACGGTGGCATCATGACACCTGGGCTGGCGACACGGTTGGCCCTGGGATCCTGGCTGTGTGGCTTTTCTG
CAATCATAGTTCCTGCTGCCCTCATTGCCCGCCTCTCTTTCTGCGGCTCACGTGTCATCAACCACTTCTT
CTGTGACATTTCGCCCTGGATAGTGCTTTCCTGCACGGACACGCAGGTGGTAGAGCTAGTGTCTTTTGGT
ATTGCCTTCTGTGTCATTCTGGGCTCCTGTGGTATCACACTAGTCTCCTATGCCTACATCATCACTACCA
TCATCAAGATTCCCTCTGCCCAGGGCCGGCACCGCGCCTTCTCTACCTGCTCATCCCATCTCACTGTGGT
GCTTATTTGGTATGGCTCTACTATCTTCTTGCACGTGAGGACCTCGGTAGAGAGCTCCTTGGACCTCACC
AAAGCTGTCACAGTGCTCAATACCATTGTCACACCCGTCTTGAACCCTTTCATATATACCCTGAGGAACA
AGGATGTGAAGGAGGCTCTGCGCAGGACAATGAAGGGGAAGTGA

Translation (317 aa):
MSSKYLMAWSTGQNLSTPGPFILLGFPGPRSMRIGLFLLFLVMYLLTVAGNLAIISLVGAHRCLQTPMYF
FLCNLSFLEIWFTTACVPKTLATFAPRGGAISLAGCATQMYFVFSLGCTEYFLLAVMAYDRYLAICLPLR
YGGIMTPGLATRLALGSWLCGFSAIIVPAALIARLSFCGSRVINHFFCDISPWIVLSCTDTQVVELVSFG
IAFCVILGSCGITLVSYAYIITTIIKIPSAQGRHRAFSTCSSHLTVVLIWYGSTIFLHVRTSVESSLDLT
KAVTVLNTIVTPVLNPFIYTLRNKDVKEALRRTMKGK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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