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Report for CCDS22090.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22090.1 Public Mus musculus 8 Efnb2 23 108 98 CCDS HistoryNCBI Gene:13642Re-query CCDS DB by CCDS ID:22090.1Re-query CCDS DB by GeneID:13642See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22090.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001319.14 ENSMUSP00000001319.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001319.14Link to Ensembl Protein Viewer:ENSMUSP00000001319.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001319Re-query CCDS DB by Protein ID:ENSMUSP00000001319
Original member Current member NCBI NM_010111.6 NP_034241.2 Accepted alive Link to Nucleotide Sequence:NM_010111.6Link to Protein Sequence:NP_034241.2Re-query CCDS DB by Nucleotide ID:NM_010111Re-query CCDS DB by Protein ID:NP_034241Link to BLAST:NP_034241.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034241.2 336 P52800 336 100% 0 0

Chromosomal Locations for CCDS 22090.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 8620588 8620976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 8622331 8622444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 8623148 8623240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 8639206 8639489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 8660484 8660614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGGCCATGGCCCGGTCCAGGAGGGACTCTGTGTGGAAGTACTGTTGGGGACTTTTGATGGTTTTGTGCA
GAACTGCGATCTCCAGATCGATAGTTTTAGAGCCTATCTACTGGAATTCCTCGAACTCCAAATTTCTACC
CGGACAAGGCCTGGTACTATACCCACAGATAGGAGACAAATTGGATATTATTTGCCCCAAAGTGGACTCT
AAAACTGTTGGCCAGTATGAATATTATAAAGTTTATATGGTTGATAAAGACCAAGCAGACAGATGCACAA
TTAAGAAGGAGAATACCCCGCTGCTCAACTGTGCCAGACCAGACCAAGATGTGAAATTCACCATCAAGTT
TCAAGAATTCAGCCCTAACCTCTGGGGTCTAGAATTTCAGAAGAACAAAGATTACTACATTATATCTACA
TCAAATGGGTCTTTGGAGGGCCTGGATAACCAGGAGGGAGGGGTGTGCCAGACAAGAGCCATGAAGATCC
TCATGAAAGTTGGACAAGATGCAAGTTCTGCTGGATCAGCCAGGAATCACGGTCCAACAAGACGTCCAGA
GCTAGAAGCTGGTACAAATGGGAGAAGTTCAACAACAAGTCCCTTTGTGAAGCCAAATCCAGGTTCTAGC
ACCGATGGCAACAGCGCGGGGCATTCCGGGAACAATCTCCTGGGTTCCGAAGTGGCCTTATTCGCAGGGA
TCGCATCAGGATGCATCATCTTCATCGTCATCATCATCACTTTGGTGGTGCTGCTGCTCAAGTACCGCAG
GAGACACCGCAAACACTCTCCACAGCACACGACCACGCTGTCTCTCAGCACACTGGCCACGCCCAAGCGA
GGTGGCAACAACAATGGCTCGGAGCCCAGTGACGTTATCATACCACTAAGGACTGCAGACAGCGTCTTCT
GCCCGCACTACGAGAAGGTCAGCGGGGACTATGGGCACCCGGTGTACATCGTGCAGGAGATGCCCCCACA
GAGTCCTGCCAACATTTACTACAAGGTCTGA

Translation (336 aa):
MAMARSRRDSVWKYCWGLLMVLCRTAISRSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDS
KTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIIST
SNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSARNHGPTRRPELEAGTNGRSSTTSPFVKPNPGSS
TDGNSAGHSGNNLLGSEVALFAGIASGCIIFIVIIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKR
GGNNNGSEPSDVIIPLRTADSVFCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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