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Report for CCDS22535.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22535.2 Public Mus musculus 8 Ogfod1 23 108 98 CCDS HistoryNCBI Gene:270086Re-query CCDS DB by CCDS ID:22535.2Re-query CCDS DB by GeneID:270086See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22535.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109556.8 ENSMUSP00000105183.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109556.8Link to Ensembl Protein Viewer:ENSMUSP00000105183.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109556Re-query CCDS DB by Protein ID:ENSMUSP00000105183
Original member NCBI NM_177767.4 NP_808435.3 Updated not alive Link to Nucleotide Sequence:NM_177767.4Link to Protein Sequence:NP_808435.3Re-query CCDS DB by Nucleotide ID:NM_177767Re-query CCDS DB by Protein ID:NP_808435
Current member NCBI NM_177767.5 NP_808435.3 Accepted alive Link to Nucleotide Sequence:NM_177767.5Link to Protein Sequence:NP_808435.3Re-query CCDS DB by Nucleotide ID:NM_177767Re-query CCDS DB by Protein ID:NP_808435Link to BLAST:NP_808435.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808435.3 545 Q3U0K8-1 545 100% 0 0

Chromosomal Locations for CCDS 22535.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94037289 94037442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94038965 94039110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94047272 94047318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94052075 94052175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94054604 94054720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94055253 94055344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94055536 94055664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94056044 94056157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94057716 94057795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94058050 94058363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94062967 94063089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94063469 94063527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94064179 94064340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGAACGGGAAGCGGCCGGCGGATCCTGGCCCAGCGCGGCCAATGAAGAAGGGAAAGAAGCAGGTATCGG
CAGAGTTTTCGGACGCTGTCACTGAAGAAATCCTGAGGAAGCAGGTGGCTGAGGCCTGGAGCTGCCGGAC
ACCGTTCAGCCATGAAGCTATTGCCTTGGACATGGATCCTTTCCTTCACTGTGTGATCCCAAACTTCATC
CAAAGCCAAGACTTCTTGGAAGGACTTCACAAAGAGCTTTTGAGCCTGGACTTCCATGAAAAGTACAATG
ATTTATATAAGTTCCAACAGTCTGATGATTTGAAGAACCGAAAAGAGCCCCATATCTCAGCTTTAAGGAA
ACTTATGTTTGAAGATTTTCGGGCCTGGCTTTCTAAGGTTTCCGGCATTGACCTAGAACCAACCATTGAC
ATGTCGTGTGCGAAATACGAGTTCACTGATGCTCTGCTCTGCCATGATGATGAACTGGAGGGGCGCCGGA
TCGCTTTCATTCTGTACCTGGTTCCTTCTTGGGACAGGGACTTGGGGGGCACCCTGGACCTTTATGACAC
TGATGAACACTTGCAGCCAAAGCAGATTGTCAAGTCTCTTATCCCTTCCTGGAACAAACTGGTTTTCTTT
GAAGTGTCTCCAGTATCCTTTCACCAGGTGTCTGAAGTCCTGTCTGAAGAAACATCACGTTTGTCTATAA
GTGGCTGGTTTTATGGTCCTTCATTAACCAGGCCTCCTACCTACTTTGAGCCCCCAATCCCTCGAAACCC
TCACATCCCACAAGATCATGAAATTTTATATGAGTGGATCAACCCTGCTTACCTGGAAATGGATTATCAA
ATGCAAATTCAAGAAGAATTTGAAGAAAGGTCTGAAATTCTCCTGAAGGAGTTTCTTAAGCCTGAGAAAT
TTGCAGAGGTCTGTGAAGCCTTGGAGAAAGGAGATGTGGAATGGAAAAGCCATGGTCCCCCAAACAAAAG
GTTTTATGAGAAAGCAGAAGAAAATAACCTCCCTGACGTGCTGAAGGAATGCATGGGCCTGTTCCGCTCT
GAGGCGCTCTTCCTGCTGCTCTCCAACCTCACTGGCCTGAAGCTTCACTTCTTGGCCCCTTCAGAAGATG
ATGAGACTGAGGAGAAAGGAGAGGGGGAGACAGCCAGTGCTGCTGCTGGCACTGAAGAAGGGACTAGCCG
ACGCCCCTCGGGGCCAGAGAATAATCAGGTGGCCGCTGGCAGTCACAGTCAAGAGAACGGTGAACAGGCA
GACCCAGAAGCACAGGAAGAGGAAGCAAAGAAAGAATCGAGCGTTCCCATGTGCCAGGGGGAGCTGAGGC
GTTGGAAGACTGGCCATTACACATTAGTCCACGACAACACCAAGACTGAATTTGCCCTGGACCTGTTTCT
GTACTGTGGCTGTGAAGGCTGGGAGCCCGAATATGGCGGCTTTACCTCCTACATTGCTAAAGGTGAAGAT
GAAGAGCTGCTCATAGTGAATCCAGAAAACAACTCTTTGGCGTTGGTCTACAGAGACAGAGAAACGCTGA
GGTTTGTGAAACACATCAACCACCGCAGCCTAGAGCAGAGCAAAGCCTTCCCAAGCAGAAGCGGCTTCTG
GGACTTCGCATTCATCTACTATGAGTAA

Translation (545 aa):
MNGKRPADPGPARPMKKGKKQVSAEFSDAVTEEILRKQVAEAWSCRTPFSHEAIALDMDPFLHCVIPNFI
QSQDFLEGLHKELLSLDFHEKYNDLYKFQQSDDLKNRKEPHISALRKLMFEDFRAWLSKVSGIDLEPTID
MSCAKYEFTDALLCHDDELEGRRIAFILYLVPSWDRDLGGTLDLYDTDEHLQPKQIVKSLIPSWNKLVFF
EVSPVSFHQVSEVLSEETSRLSISGWFYGPSLTRPPTYFEPPIPRNPHIPQDHEILYEWINPAYLEMDYQ
MQIQEEFEERSEILLKEFLKPEKFAEVCEALEKGDVEWKSHGPPNKRFYEKAEENNLPDVLKECMGLFRS
EALFLLLSNLTGLKLHFLAPSEDDETEEKGEGETASAAAGTEEGTSRRPSGPENNQVAAGSHSQENGEQA
DPEAQEEEAKKESSVPMCQGELRRWKTGHYTLVHDNTKTEFALDLFLYCGCEGWEPEYGGFTSYIAKGED
EELLIVNPENNSLALVYRDRETLRFVKHINHRSLEQSKAFPSRSGFWDFAFIYYE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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