NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22769.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22769.1 Public Mus musculus 8 Galnt2 23 108 98 CCDS HistoryNCBI Gene:108148Re-query CCDS DB by CCDS ID:22769.1Re-query CCDS DB by GeneID:108148See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22769.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034458.8 ENSMUSP00000034458.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034458.8Link to Ensembl Protein Viewer:ENSMUSP00000034458.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034458Re-query CCDS DB by Protein ID:ENSMUSP00000034458
Original member Current member NCBI NM_139272.2 NP_644678.2 Accepted alive Link to Nucleotide Sequence:NM_139272.2Link to Protein Sequence:NP_644678.2Re-query CCDS DB by Nucleotide ID:NM_139272Re-query CCDS DB by Protein ID:NP_644678Link to BLAST:NP_644678.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_644678.2 570 Q6PB93-1 570 100% 0 0

Chromosomal Locations for CCDS 22769.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 124231527 124231649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124295358 124295451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124305515 124305668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124323672 124323770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124323992 124324059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124324271 124324336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124328092 124328213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124329713 124329800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124332009 124332096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124332568 124332671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124334275 124334401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124336574 124336666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124337262 124337345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124338443 124338569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124340819 124340938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124343303 124343458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGCGGCGGCGCTCGCGGATGCTGCTGTGCTTCGCGCTGCTCTGGGTCCTGGGCATCGCCTACTACATGT
ACTCGGGGGGCGGCTCCGCGCTGGCCGCGGGCGGGGGCGGCGCCGGCAGGAAGGGTGACTGGAATGACAT
CGACTCCATTAAGAAGAAAGACCTTCACCACAGCAGAGGAGATGAGAAAGCACAGGGTGTGGAGACCCTC
CCTCCAGGCAAAGTCCGGTGGCCAGACTTTAACCAGGAGGCATACGTTGGCGGTACAATGGTTCGCTCTG
GGCAGGACCCGTACGCACGCAACAAGTTCAACCAGGTGGAGAGTGACAAGCTGCACATGGACAGAGGCAT
CCCCGACACCCGGCATGACCAGTGTCAGCGCAAGCAGTGGCGAGTGGACCTGCCAGCCACCAGCGTGGTG
ATCACATTCCACAATGAAGCCAGGTCGGCCCTGCTGCGGACGGTGGTCAGTGTCCTCAAGAGGAGTCCAC
CTCACCTCATCAAGGAGATAATCCTGGTGGATGACTACAGCAACGACCCTGAGGACGGGGCCCTCTTGGG
GAAAATCGAGAAGGTGCGGGTCCTCAGAAATGACCGGAGAGAAGGTCTAATGCGCTCTCGGGTCCGGGGT
GCCGACGCCGCCCAGGCCAAGGTCCTGACCTTCCTAGACAGTCACTGCGAGTGTAACGAGCGATGGCTGG
AGCCACTCTTGGAGCGGGTTGCTGAGGACAGGACCCGAGTTGTATCCCCCATTATCGATGTCATTAACAT
GGATAATTTCCAGTATGTGGGCGCCTCTGCTGACCTCAAGGGTGGTTTTGACTGGAACTTGGTGTTCAAG
TGGGATTACATGACACCAGAGCAGAGGCGATCCCGGCAGGGGAACCCAGTTGCCCCTATAAAAACTCCGA
TGATCGCTGGCGGCCTCTTCGTGATGGACAAGCTCTATTTTGAAGAGCTGGGGAAGTACGACATGATGAT
GGACGTGTGGGGAGGAGAGAACTTGGAGATCTCATTCCGAGTGTGGCAGTGTGGTGGCAGCCTGGAGATC
ATCCCGTGCAGCCGCGTGGGCCACGTGTTCCGGAAGCAGCATCCCTACACGTTCCCCGGTGGCAGCGGCA
CTGTCTTTGCCCGGAACACACGCCGGGCAGCTGAAGTCTGGATGGATGAGTACAAACATTTCTACTACGC
AGCGGTGCCTTCTGCACGAAACGTGCCCTATGGGAATATTCAGAGCAGGCTGGAGCTCAGGAAAAAGCTG
GGCTGCAAGCCCTTCAAGTGGTACCTGGACAACGTCTACCCGGAGCTGAGGGTTCCAGACCACCAGGACA
TAGCTTTCGGGGCCTTACAGCAGGGAACCAACTGCCTGGACACCTTGGGACACTTCGCGGATGGAGTTGT
TGGAATTTATGAGTGTCACAACGCTGGAGGAAACCAGGAATGGGCCTTGACAAAGGAGAAGTCGGTGAAG
CACATGGACCTGTGCCTTACTGTGGTGGACCGTTCGCCTGGGTCACTCATCAGGCTGCAGGGCTGCCGGG
AGAACGACAGCAGACAGAAGTGGGAGCAGATCGAAGGCAACTCCAAACTGCGACACGTGGGCAGCAACCT
GTGCCTGGATAGCCGCACTGCCAAGAGCGGAGGCCTGAGTGTGGAGGTGTGTGGCCCGGCCCTGTCACAA
CAGTGGAAGTTCTCACTCAACCTGCAGCAATAA

Translation (570 aa):
MRRRSRMLLCFALLWVLGIAYYMYSGGGSALAAGGGGAGRKGDWNDIDSIKKKDLHHSRGDEKAQGVETL
PPGKVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLHMDRGIPDTRHDQCQRKQWRVDLPATSVV
ITFHNEARSALLRTVVSVLKRSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRG
ADAAQAKVLTFLDSHCECNERWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFK
WDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKLYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEI
IPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKHFYYAAVPSARNVPYGNIQSRLELRKKL
GCKPFKWYLDNVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGIYECHNAGGNQEWALTKEKSVK
HMDLCLTVVDRSPGSLIRLQGCRENDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQ
QWKFSLNLQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH