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Report for CCDS22929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22929.1 Public Mus musculus 9 Bmper 23 108 98 CCDS HistoryNCBI Gene:73230Re-query CCDS DB by CCDS ID:22929.1Re-query CCDS DB by GeneID:73230See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22929.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071982.6 ENSMUSP00000071872.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071982.6Link to Ensembl Protein Viewer:ENSMUSP00000071872.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071982Re-query CCDS DB by Protein ID:ENSMUSP00000071872
Original member Current member NCBI NM_028472.2 NP_082748.1 Accepted alive Link to Nucleotide Sequence:NM_028472.2Link to Protein Sequence:NP_082748.1Re-query CCDS DB by Nucleotide ID:NM_028472Re-query CCDS DB by Protein ID:NP_082748Link to BLAST:NP_082748.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082748.1 685 Q8CJ69 685 100% 0 0

Chromosomal Locations for CCDS 22929.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 23223641 23223773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23224758 23224843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23254372 23254471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23293405 23293487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23297206 23297296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23300940 23301022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23366192 23366291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23373833 23373942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23375566 23375706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23377638 23377742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23381429 23381474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23399350 23399679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23406495 23406831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23473446 23473576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23483851 23484032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGCTCTGGTTCTTCAGCGTCAGGGCTCTGGCTGAGCGTCCTTGCCGACGCTCGCCTGGGATTACCTGCT
GCGTCTTGCTGCTGCTCAATTGCTCCGGGGTCCCCATGTCTCTGGCTTCCTCCTTCCTGACAGGGTCTGT
TGCAAAATGTGAAAATGAAGGGGAGGTCCTCCAAATTCCATTTATCACAGACAACCCTTGCATAATGTGT
GTGTGTTTGAACAAAGAGGTGACTTGTAAGAGGGAGAAGTGCCCTGTGCTGTCACGGGACTGTGCGCTGG
CCATCAAGCAGAGAGGCGCCTGCTGTGAACGATGCAAAGGTTGTACCCATGAAGGAAGAACCTACAACAG
TTCCTTCAAGTGGCAAACCCCGGCTGAGCCATGTGTCCTTCGGCAGTGCCAGGAGGGTGTGGTGACAGAG
TCTGAGGTGCGCTGTGTTGTTCATTGTAAAAATCCCGCAGAGCATCAAGGAGCCTGCTGCCCTACCTGCC
CAGGCTGTGTGTTTGAAGGTGTGCAATACCGGGAAGGAGAAGAATTTCAGCCAGAAGGAAACAAATGTAT
TACATGCTCCTGCGTTGGAGGCAGGACACAGTGCGTGAGAGAAGTCTGTCCCATTCTCTCTTGTCCCCAG
CACCTTAGTCACACACCCTCAGGACAGTGCTGCCCCAAATGTTTGGGTCAGAGAAAAGTATTCGACCTTC
CCTTTGGGAGCTGCCTGTTTCGCAGTGATGTTTATGACAATGGAGCCTCATTTGTCTATGATAACTGCAC
AGTATGCACTTGCAAGGACTCAACAATGGTTTGTAAGAAGAAGTGCTCCCACCCTGGTGTCTGTAACAGT
GATGAGGATGCCTGTTGTGAAGACTGTCTCTTACGGGTGCCCCCTGAAGACATCAAAGTGTGCAAGTTCG
GTAGCAAGATTTTCAGGGATGGAGAGATGTGGTCCTCAGTCAACTGCAGCATCTGTGCTTGTGTGAAGGG
GAAGACAGAGTGTCGAAAGAAGCAGTGTGTTCCTGTCAGCAGCTGCCCACAGGGTAAAATTCTCAACAGG
AAAGGATGCTGTCCTATCTGCACTGAAAAACCTGGTGTGTGCACAGTATTCGGAGATCCCCACTACAACA
CTTTTGATGGGCGGACATTTAACTTTCAGGGGACGTGTCAGTATGTTTTGACAAAAGACTGCTCCTCCCC
AGCCTCACCCTTCCAGGTGCTGGTGAAGAATGATGCACGGAGGACCCGTTCCTTCTCCTGGACCAAGTCT
GTGGAGCTGATGCTGGGCGAAAGCACAGTCAGCCTGCAGCAGCACCTCACTGTGCGCTGGAATGGCTCTC
GCATTGCCCTTCCCTGCCACACACCCCACTTCCACATCGACCTGGACGGCTACCTTTTGAAAGTGACTAC
CAGAGCAGGTTTGGAGATATCGTGGGATGGAGACAGTTTTGTGGAGGTCATGGCTGCCCCTCATCTCAAG
GGCAAGCTCTGTGGTCTTTGTGGCAACTACAATGGTCATAAACGTGATGACTTGATTGGTGGAGATGGGA
ACTTCAAGTTTGACGTGGATGACTTTGCTGAATCGTGGAGGGTGGAATCCAACGAATTCTGCAACCGACC
ACAGAGAAAACCAGTACCTGAGCTCTGTCAAGGCACAGTGAAGGTGAAGCTTCGAGCCCATCGAGAATGC
CAGAAACTCAAGTCCTGGGAGTTCCAGACCTGCCACTCTACAGTGGACTATACCACTTTCTACCGGTCCT
GTGTAACAGACATGTGTGAATGTCCAGTCCATAAAAACTGTTACTGTGAGTCATTTCTGGCGTATACCCG
TGCCTGTCAGAGAGAGGGAATCAAAGTGCACTGGGAACCTCAGCAGAGCTGTGCAGCCACCCAGTGCAAA
CATGGTGCTGTGTATGATACCTGTGGCCCAGGATGTGTGAAGACATGTGATAACTGGAATGAGATCGGCC
CATGCAATAAGCCCTGCATTGCAGGTTGCCACTGCCCAGCAAATCTGGTCCTTCATAAGGGAAGGTGCAT
CAAGCCAGTCCTCTGTCCTCAGCGATGA

Translation (685 aa):
MLWFFSVRALAERPCRRSPGITCCVLLLLNCSGVPMSLASSFLTGSVAKCENEGEVLQIPFITDNPCIMC
VCLNKEVTCKREKCPVLSRDCALAIKQRGACCERCKGCTHEGRTYNSSFKWQTPAEPCVLRQCQEGVVTE
SEVRCVVHCKNPAEHQGACCPTCPGCVFEGVQYREGEEFQPEGNKCITCSCVGGRTQCVREVCPILSCPQ
HLSHTPSGQCCPKCLGQRKVFDLPFGSCLFRSDVYDNGASFVYDNCTVCTCKDSTMVCKKKCSHPGVCNS
DEDACCEDCLLRVPPEDIKVCKFGSKIFRDGEMWSSVNCSICACVKGKTECRKKQCVPVSSCPQGKILNR
KGCCPICTEKPGVCTVFGDPHYNTFDGRTFNFQGTCQYVLTKDCSSPASPFQVLVKNDARRTRSFSWTKS
VELMLGESTVSLQQHLTVRWNGSRIALPCHTPHFHIDLDGYLLKVTTRAGLEISWDGDSFVEVMAAPHLK
GKLCGLCGNYNGHKRDDLIGGDGNFKFDVDDFAESWRVESNEFCNRPQRKPVPELCQGTVKVKLRAHREC
QKLKSWEFQTCHSTVDYTTFYRSCVTDMCECPVHKNCYCESFLAYTRACQREGIKVHWEPQQSCAATQCK
HGAVYDTCGPGCVKTCDNWNEIGPCNKPCIAGCHCPANLVLHKGRCIKPVLCPQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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