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Report for CCDS23052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23052.1 Public Mus musculus 9 AW551984 23 108 98 CCDS HistoryNCBI Gene:244810Re-query CCDS DB by CCDS ID:23052.1Re-query CCDS DB by GeneID:244810See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042485.10 ENSMUSP00000042582.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042485.10Link to Ensembl Protein Viewer:ENSMUSP00000042582.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000042485Re-query CCDS DB by Protein ID:ENSMUSP00000042582
Original member Current member EBI ENSMUST00000119722.7 ENSMUSP00000113212.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119722.7Link to Ensembl Protein Viewer:ENSMUSP00000113212.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119722Re-query CCDS DB by Protein ID:ENSMUSP00000113212
Original member Current member NCBI NM_001199556.1 NP_001186485.1 Accepted alive Link to Nucleotide Sequence:NM_001199556.1Link to Protein Sequence:NP_001186485.1Re-query CCDS DB by Nucleotide ID:NM_001199556Re-query CCDS DB by Protein ID:NP_001186485Link to BLAST:NP_001186485.1
Original member Current member NCBI NM_001359951.1 NP_001346880.1 Accepted alive Link to Nucleotide Sequence:NM_001359951.1Link to Protein Sequence:NP_001346880.1Re-query CCDS DB by Nucleotide ID:NM_001359951Re-query CCDS DB by Protein ID:NP_001346880Link to BLAST:NP_001346880.1
Original member Current member NCBI NM_178737.5 NP_848852.1 Accepted alive Link to Nucleotide Sequence:NM_178737.5Link to Protein Sequence:NP_848852.1Re-query CCDS DB by Nucleotide ID:NM_178737Re-query CCDS DB by Protein ID:NP_848852Link to BLAST:NP_848852.1

Chromosomal Locations for CCDS 23052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 39589046 39589125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39589643 39589769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39590601 39590731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39591204 39591308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39591403 39591501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39592796 39593043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39593329 39593429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39593671 39593835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39594541 39594655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39596595 39596674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39597055 39597199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39597608 39597696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39597914 39598083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39599278 39599392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39599645 39599820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39599939 39600161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39600468 39600670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39600780 39600822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2415 nt):
ATGGTGCGTTCTGGCGGCTTACTCACTAGCATAAGAGATCCAGTGGCACTGAAGAGCATTGCTGTGACTC
TGTCCATCAATGATTTTGTGGCTGGTGTGTCTGCAACCCTAAACTATGAGAATGAAGAGAAATCACCCCT
GGAGGCCTTCTTTGTGTTCCCCATGGATGAAGATTCTGCTGTCTACAGCTTTGAGGCCTTTGTGGATGGG
AAGAAAATTGTGGCAGAACTTCAGGACAAGTACCAGGCCCACAAAAGGTATGAAGAGGCCCTCTCTGGAG
GATATCAGGCCTACTTATTGGAGGAAGACAAGTGTTCCCGGGATGTCTTCTGTTGCAATGTGGGGAACCT
GCAACCAGGGTCAAAAGTGTCACTGACCCTGAGATATGTGCAAGAACTTCCCTTGGAAGACGATGGGGCC
CTGCGTTATGTGCTCCCAGCCATCCTGAATCCTAGATACCATCTCTCCGATGGACGTGAGGACAGTAATC
TGGATATGAAGACCCCAATAGTCCCTTTGGAGGAATTGCCCTACACACTCAGCATGGTTGCCACTATCAG
CTCCCAGCTTGGTATCAGTACAATCCAATCCAACTGTCCCTTGAATCCCATTGAGTACACTGGAGATAAC
AAGACCTCAGCTCAGGTTTCCTTGGCTGAAGGACACAAATTTGACCGGGATGTGGAACTCCTGATTTTCT
ATAGGAAGGTGCACAGTCCGAGCGTAGCTGTGGAGATGGGGATGTCTGGAAGGCCATCAGATAGTTTAAT
GGGAGCACCTTCTGCAATGGTGAGTTTCTACCCAGATATCCCAGAAGTGGAGACCACAACAAAATGTGGA
GAATTTGTGTTCCTTATGGACCGTTCAAGAAGCATGAATAGCCCCATGAGTTCCAAGGACAAGTCTCAGC
TGAGAATAGATGCTGCCAAGGAAACACTGATTCTGCTATTGAAGAGTTTGCCAATGGGCTGCTATTTCAA
CATCTATGGATTTGGAGCCACCCATGAGGAGTTCTTTCCAGACAGTGTGATGTACAATCAGGAAACCATG
CAGATTGCTGTGAAGAAAGTAAAGCGTTTGTTGGCGGATCTAGGAGGGACTGAACTTTTAACACCACTAC
GGAAAATTTTTAGGAAACCCCCAATCCCAGGGCATCCCTTACAGGTCTTTGTCTTCACTGATGGAGAAGT
TGTTGAAACTTTTAGTGTAATCAGAGAAGTTATGTTCCAGAGCAAGAAGCACAGATGTTTCTCATTTGGC
ATTGGAGAAGGGGCCTCCACTAGCTTAATCAAGAACCTTGCCCGGGTGTCAGGGGGCACTGCAGAGTTTA
TCACAGGCAATGATAGGATGCAGTCCAAGGCCCTTAGATCTCTGAGGCGTTCTTTACAGTCTGTAGTAGA
GGATGTCTCTCTGAGCTGGAATTTGCCTCCCAAGATGTTTGCACCTATGCTATCTCCAGAACAAACTTCT
ATCTTTAGGGGTCAAAGGCTAATCATCTACAGCCTACTGATTGGAAAAATACCAAAAGAAGAGGCAACCG
GTGAAGTGTGTCTCTCATATAAGCTTCATGGTAAAAGTTATGAGGAAAAAGTGACATTTTCTCTACAGCC
AAAGCCTGATGACAACCTCACCATTCACCGTCTTGCTGCAAAGTCCATGATCCAGTCCAAAGACTTTGGC
TTCAAGGAGACGTCACTAATGTATAAGAGAGATGTGCTGGACATCAGCCTAGAGTCTGGAGTCATGAGTT
CCTTTACAGCCTTTGTTGCCATCAACAAGGAGCTCAACGAGCCCATCCAGGGGCCCCTGGTGCATAGGGA
TATCCCAAGGCCTATTCTCTTGGGTGCAGGTCCTAATAGGCCCTCTGATGGTGGTTATCCCAAAACTTTA
TTCTGCGCCAGTGCTCCTGTAACTCTGCCTCCATGGCTGAAGGGCTCAGGAAAATGTGTTGCTACAATAC
TCATGCCAAATGGCACACCCCAACAGCGTCAGAACAGCCAGAAGAAGAAATGTGTGGTTCATACAGATAC
TCGCCCTGAGTTGCCCCACCTGGCTAAATATGACAGTTACCCACAAGGGAGTAAGGAGCATAGTATTGCA
CAGCTGATATATCTCCAGAATGCAGATGGTTCCTGGGATATGAATGAGGATTTAGCTAAGATTCTAAGTA
CTAGTTTGGAAGACATCACAGCTGCATGCCCTACTGAGGTGTTAGAACCCTCAGCCTGGGCTACAATGCT
GGCCGTGATCTGGCTGCATGCCAATGGCAAGGAATTGAAGGACGAGTGGGAGCTTCTGGAAAGAAAGGCT
GTGGTTTGGCTTCACAATAATTCAGTCCGTGGTTTCAACAAGCTTATACGTACTGCCAACAAGCTCTTGA
AGACATCTTTGAGCCCCTCGATCTTCAAGTTATAA

Translation (804 aa):
MVRSGGLLTSIRDPVALKSIAVTLSINDFVAGVSATLNYENEEKSPLEAFFVFPMDEDSAVYSFEAFVDG
KKIVAELQDKYQAHKRYEEALSGGYQAYLLEEDKCSRDVFCCNVGNLQPGSKVSLTLRYVQELPLEDDGA
LRYVLPAILNPRYHLSDGREDSNLDMKTPIVPLEELPYTLSMVATISSQLGISTIQSNCPLNPIEYTGDN
KTSAQVSLAEGHKFDRDVELLIFYRKVHSPSVAVEMGMSGRPSDSLMGAPSAMVSFYPDIPEVETTTKCG
EFVFLMDRSRSMNSPMSSKDKSQLRIDAAKETLILLLKSLPMGCYFNIYGFGATHEEFFPDSVMYNQETM
QIAVKKVKRLLADLGGTELLTPLRKIFRKPPIPGHPLQVFVFTDGEVVETFSVIREVMFQSKKHRCFSFG
IGEGASTSLIKNLARVSGGTAEFITGNDRMQSKALRSLRRSLQSVVEDVSLSWNLPPKMFAPMLSPEQTS
IFRGQRLIIYSLLIGKIPKEEATGEVCLSYKLHGKSYEEKVTFSLQPKPDDNLTIHRLAAKSMIQSKDFG
FKETSLMYKRDVLDISLESGVMSSFTAFVAINKELNEPIQGPLVHRDIPRPILLGAGPNRPSDGGYPKTL
FCASAPVTLPPWLKGSGKCVATILMPNGTPQQRQNSQKKKCVVHTDTRPELPHLAKYDSYPQGSKEHSIA
QLIYLQNADGSWDMNEDLAKILSTSLEDITAACPTEVLEPSAWATMLAVIWLHANGKELKDEWELLERKA
VVWLHNNSVRGFNKLIRTANKLLKTSLSPSIFKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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