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Report for CCDS2316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2316.1 Public Homo sapiens 2 GTF3C3 24 110 108 CCDS HistoryNCBI Gene:9330Re-query CCDS DB by CCDS ID:2316.1Re-query CCDS DB by GeneID:9330See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2316.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263956.8 ENSP00000263956.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263956.8Link to Ensembl Protein Viewer:ENSP00000263956.3Re-query CCDS DB by Nucleotide ID:ENST00000263956Re-query CCDS DB by Protein ID:ENSP00000263956
Original member Current member NCBI NM_012086.5 NP_036218.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012086.5Link to Protein Sequence:NP_036218.1Re-query CCDS DB by Nucleotide ID:NM_012086Re-query CCDS DB by Protein ID:NP_036218Link to BLAST:NP_036218.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036218.1 886 Q9Y5Q9-1 886 100% 0 0

Chromosomal Locations for CCDS 2316.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 196764563 196764685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196766565 196766717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196769915 196770039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196771748 196771938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196772916 196773153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196775116 196775251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196776010 196776111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196776427 196776629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196778896 196779067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196780559 196780662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196784857 196784929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196785441 196785588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196789204 196789369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196789879 196790070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196791337 196791460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196792956 196793152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196797797 196797908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196799510 196799611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2661 nt):
ATGTCAGGGTTCAGTCCGGAACTCATCGACTACTTGGAAGGGAAAATCTCCTTTGAGGAGTTCGAACGGC
GGAGAGAAGAGAGAAAAACCCGCGAGAAGAAAAGTCTTCAGGAAAAAGGCAAGTTATCAGCTGAAGAAAA
TCCCGATGACTCTGAAGTTCCATCATCATCAGGAATTAACTCTACCAAATCCCAAGACAAAGATGTCAAT
GAAGGAGAAACATCAGATGGAGTGAGGAAGTCAGTTCACAAGGTCTTTGCTTCCATGCTTGGAGAGAATG
AAGATGATGAGGAGGAAGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAACACCTGAGCAACCCAC
TGCGGGCGATGTATTTGTATTGGAGATGGTTCTCAATCGTGAAACCAAGAAAATGATGAAAGAGAAAAGG
CCTCGGAGTAAACTTCCCAGAGCTCTGAGAGGTCTCATGGGTGAAGCCAACATTCGTTTTGCTCGAGGAG
AACGTGAAGAGGCGATATTGATGTGCATGGAAATCATAAGACAAGCTCCTCTGGCTTATGAGCCATTCTC
TACTCTAGCCATGATATATGAGGACCAAGGTGACATGGAAAAATCATTGCAGTTTGAGTTGATTGCTGCG
CATTTAAATCCCAGTGACACAGAAGAATGGGTTAGACTGGCAGAAATGTCTCTGGAACAAGACAATATTA
AGCAGGCTATTTTTTGCTATACAAAAGCTCTTAAATATGAACCTACTAATGTCCGTTATCTGTGGGAGCG
ATCAAGCCTTTATGAACAGATGGGTGATCATAAAATGGCCATGGATGGTTATAGGCGTATTTTAAACCTT
TTGTCTCCATCTGATGGCGAACGTTTTATGCAGCTGGCTAGAGATATGGCAAAGAGTTACTATGAAGCCA
ATGATGTTACTTCTGCTATTAACATAATTGATGAAGCTTTCTCAAAACACCAGGGCCTAGTCTCCATGGA
AGATGTTAACATAGCAGCTGAACTATATATTTCTAACAAACAGTATGACAAAGCTTTGGAGATAATTACA
GATTTTTCTGGAATTGTGCTGGAAAAAAAAACTTCAGAAGAAGGCACCTCAGAAGAGAATAAAGCTCCTG
AGAATGTTACCTGCACTATACCTGATGGCGTGCCAATAGATATCACAGTGAAGTTGATGGTCTGCCTTGT
ACATCTCAACATTCTTGAACCACTTAATCCTCTCTTGACAACACTAGTAGAACAGAATCCTGAAGATATG
GGAGACCTATACCTAGATGTTGCTGAAGCTTTTCTGGATGTTGGTGAATATAATTCTGCACTTCCCCTCC
TCAGTGCTCTTGTTTGCTCTGAAAGATACAACCTTGCAGTAGTTTGGCTTCGTCATGCAGAATGTTTAAA
GGCCTTAGGCTATATGGAGCGAGCTGCTGAAAGCTATGGCAAGGTGGTTGATCTGGCCCCACTCCATTTG
GATGCAAGGATTTCACTTTCTACCCTTCAGCAGCAGCTGGGCCAGCCTGAGAAAGCTCTGGAAGCTCTGG
AACCAATGTATGATCCAGATACTTTAGCACAGGATGCAAATGCTGCACAGCAGGAACTGAAGTTATTGCT
TCATCGTTCTACTCTGTTGTTTTCACAAGGCAAAATGTATGGTTATGTGGATACCTTACTTACTATGTTA
GCCATGCTTTTAAAGGTAGCAATGAATCGAGCCCAAGTTTGTTTGATATCCAGTTCCAAGTCTGGAGAGA
GGCATCTTTATCTTATTAAAGTATCGAGAGACAAAATATCAGACAGCAATGACCAAGAGTCAGCAAATTG
TGATGCAAAAGCAATATTTGCTGTGCTCACAAGCGTCTTGACAAAGGATGACTGGTGGAATCTTCTGTTG
AAGGCCATATACTCCTTATGTGACCTATCCCGATTTCAAGAGGCTGAGTTGCTTGTAGATTCCTCATTGG
AATATTACTCATTTTATGATGACAGGCAAAAACGCAAAGAACTAGAATACTTTGGTCTGTCTGCTGCAAT
TCTGGACAAAAATTTCAGAAAGGCATACAACTATATCAGGATAATGGTAATGGAAAATGTCAATAAACCC
CAGCTCTGGAACATTTTCAATCAAGTTACCATGCACTCCCAAGATGTACGACATCATCGCTTCTGTCTCC
GTTTGATGCTGAAAAACCCAGAAAATCATGCCCTATGTGTCTTAAATGGACACAATGCATTTGTATCTGG
TAGTTTTAAGCATGCGCTTGGACAGTATGTGCAAGCCTTTCGCACTCACCCTGACGAACCTCTCTATAGC
TTCTGTATAGGCCTAACCTTTATTCATATGGCATCTCAGAAGTATGTGTTACGGAGACATGCTCTTATTG
TACAGGGCTTTTCCTTTCTTAATCGATACCTCAGTTTACGTGGGCCCTGCCAGGAATCATTCTACAATTT
GGGCCGTGGCCTTCATCAGTTGGGGCTGATTCATCTTGCAATCCACTATTATCAGAAGGCCCTGGAGCTC
CCTCCACTTGTGGTAGAGGGTATAGAACTTGACCAGTTAGACTTACGAAGAGATATTGCCTACAACTTGT
CTCTCATCTATCAGAGCAGTGGGAATACCGGAATGGCTCAAACGCTTTTGTATACCTATTGTTCTATATA
A

Translation (886 aa):
MSGFSPELIDYLEGKISFEEFERRREERKTREKKSLQEKGKLSAEENPDDSEVPSSSGINSTKSQDKDVN
EGETSDGVRKSVHKVFASMLGENEDDEEEEEEEEEEEEEEETPEQPTAGDVFVLEMVLNRETKKMMKEKR
PRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFELIAA
HLNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNL
LSPSDGERFMQLARDMAKSYYEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIIT
DFSGIVLEKKTSEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDM
GDLYLDVAEAFLDVGEYNSALPLLSALVCSERYNLAVVWLRHAECLKALGYMERAAESYGKVVDLAPLHL
DARISLSTLQQQLGQPEKALEALEPMYDPDTLAQDANAAQQELKLLLHRSTLLFSQGKMYGYVDTLLTML
AMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRDKISDSNDQESANCDAKAIFAVLTSVLTKDDWWNLLL
KAIYSLCDLSRFQEAELLVDSSLEYYSFYDDRQKRKELEYFGLSAAILDKNFRKAYNYIRIMVMENVNKP
QLWNIFNQVTMHSQDVRHHRFCLRLMLKNPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYS
FCIGLTFIHMASQKYVLRRHALIVQGFSFLNRYLSLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKALEL
PPLVVEGIELDQLDLRRDIAYNLSLIYQSSGNTGMAQTLLYTYCSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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