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Report for CCDS23191.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23191.1 Public Mus musculus 9 Idh3a 23 108 98 CCDS HistoryNCBI Gene:67834Re-query CCDS DB by CCDS ID:23191.1Re-query CCDS DB by GeneID:67834See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23191.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167866.1 ENSMUSP00000127526.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167866.1Link to Ensembl Protein Viewer:ENSMUSP00000127526.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167866Re-query CCDS DB by Protein ID:ENSMUSP00000127526
Original member Current member NCBI NM_029573.2 NP_083849.1 Accepted alive Link to Nucleotide Sequence:NM_029573.2Link to Protein Sequence:NP_083849.1Re-query CCDS DB by Nucleotide ID:NM_029573Re-query CCDS DB by Protein ID:NP_083849Link to BLAST:NP_083849.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083849.1 366 Q9D6R2-1 366 100% 0 0

Chromosomal Locations for CCDS 23191.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 54586517 54586543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54589858 54589920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54592394 54592477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54595166 54595280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54596002 54596189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54596835 54596968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54598393 54598495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54598599 54598663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54599593 54599677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54601062 54601214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54603282 54603365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGGCCGGGTCCGCGTGGGTGTCCAAGGTCTCTCGGCTGCTGGGTGCATTCCACAACACAAAACAGGTGA
CAAGAGGTTTTGCTGGTGGTGTTCAGACAGTAACTTTAATTCCTGGAGATGGAATTGGCCCAGAAATTTC
AGCCTCAGTCATGAAGATTTTTGATGCTGCCAAAGCACCTATTCAGTGGGAGGAGCGCAATGTCACAGCA
ATTCAAGGACCAGGAGGAAAGTGGATGATCCCTCCAGAAGCCAAGGAGTCCATGGATAAGAACAAGATGG
GCTTGAAAGGCCCACTAAAGACCCCAATAGCCGCTGGCCATCCATCTATGAATCTGTTGCTTCGTAAGAC
ATTTGACCTTTATGCCAATGTCCGGCCATGTGTCTCAATTGAAGGTTATAAAACCCCTTACACGGATGTA
AATATCGTCACCATCCGAGAGAACACGGAAGGAGAATACAGTGGAATTGAGCATGTGATCGTTGATGGGG
TTGTGCAGAGCATCAAGCTCATCACCGAAGAAGCAAGCAAGCGCATTGCAGAGTTTGCCTTCGAGTACGC
TCGGAACAACCACCGGAGCAACGTCACAGCTGTGCACAAAGCTAACATCATGAGGATGTCAGATGGGCTC
TTTCTGCAAAAATGCAGGGAAGTTGCGGAGAACTGTAAAGACATTAAATTTAACGAGATGTACCTTGATA
CTGTATGTTTAAATATGGTACAAGACCCATCCCAGTTTGATGTTCTTGTCATGCCAAATTTATACGGAGA
CATCCTTAGTGATCTGTGTGCAGGACTGATTGGAGGTCTTGGGGTGACTCCAAGTGGCAATATTGGAGCC
AACGGTGTTGCCATCTTTGAATCGGTTCATGGAACAGCCCCGGACATTGCAGGCAAGGACATGGCCAACC
CCACGGCCCTCCTGCTTAGTGCTGTGATGATGCTTCGCCACATGGGACTTTTTGACCATGCAGCAAAAAT
CGAGGCTGCATGTTTTGCTACAATTAAGGATGGAAAGAGCTTAACAAAAGATCTGGGAGGCAACGCGAAG
TGCTCTGACTTCACAGAAGAAATCTGTCGTAGAGTCAAAGACTTAGATTAG

Translation (366 aa):
MAGSAWVSKVSRLLGAFHNTKQVTRGFAGGVQTVTLIPGDGIGPEISASVMKIFDAAKAPIQWEERNVTA
IQGPGGKWMIPPEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDV
NIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEEASKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGL
FLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGA
NGVAIFESVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLFDHAAKIEAACFATIKDGKSLTKDLGGNAK
CSDFTEEICRRVKDLD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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