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Report for CCDS23333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23333.1 Public Mus musculus 9 Dnaaf4 23 108 98 CCDS HistoryNCBI Gene:67685Re-query CCDS DB by CCDS ID:23333.1Re-query CCDS DB by GeneID:67685See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23333.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034734.8 ENSMUSP00000034734.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034734.8Link to Ensembl Protein Viewer:ENSMUSP00000034734.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034734Re-query CCDS DB by Protein ID:ENSMUSP00000034734
Original member Current member NCBI NM_026314.3 NP_080590.3 Accepted alive Link to Nucleotide Sequence:NM_026314.3Link to Protein Sequence:NP_080590.3Re-query CCDS DB by Nucleotide ID:NM_026314Re-query CCDS DB by Protein ID:NP_080590Link to BLAST:NP_080590.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080590.3 420 Q8R368 420 100% 0 0

Chromosomal Locations for CCDS 23333.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 72958875 72958997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72960582 72960729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72961258 72961391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72961915 72962140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72964091 72964236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72965169 72965278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72969032 72969185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72971973 72972078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72972327 72972442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGCCAGTGCGAGTGAGCGAGTTCAGCTGGCAGCAGACGCCGGCCACGATCTTCCTGTCGCTGCCTTTGC
GGGGCGTCTGCGTGCGCGATGCTGACGTATTCTGTGGGGAAAGTTACCTGAAGGTTAACTTTCCTCCATT
TTTATTTGAGCTGTTTCTCTATGCTCCTATAGATGATGGGAAGAGCAAAGCCAAGATTGGAAATGACACG
ATTCTTTTCACATTGTATAAAAAGGAGCCAGTTCTGTGGGATAGCCTTTCTGTGCCGGGTGTTGATAAAG
AGATGATGCAGAGAATAAGAGAAAAATCTATCTTGCAAGCACAGGAGAAAGCAAAAGAGGCCACAGAAGC
AAAAGCTGTTGCCAAGCGAGAAGACCAGAGATACGCACTAGGCGAGATGATGAAGATTGAAGAAGAAGAG
AGGAAAAAAATAGAAGATATGAAAGAAAATGAACGGAAAAAGGCAACTAGCGAATTAGAAGCGTGGAAAG
AATGTCAAAAGAAAGCTGACGGACAAAAAAGAGTCCAGAGGAAGGAGAAACCGCTCGAGGGAAAGCAAGC
TGAAGAGACCAAAGCTCTAAAACCTCGGGGTTTGCCCCGGAAGGCCCCACCCACTCGCCTCCCCACAAGA
GGGAGGAATTGGGAAAACATATTTCCTGAGAAGTTAAAGGAAGACAGAGTCCCTGCGCCTCGCTCCGCTG
GCAGTATTCAAATCAGCTTTACCCCTCGAGTGTTCCCAACAGCACTTCGGGAATCCCAAGTCGCAGAAGA
GGAGGAGTGGCTGCATAAACAAGCAGAAGCACGGAGAGCCATGAGCACTGACCTTCCTGAGTTCTTTGAC
TTAAAAGAAGAAGAGAGGAATCCAGACTGGTTGAAAGACAAGGGAAACAAATTGTTTGCAACAGAAAACT
ATTTGGCAGCGGTTGATGCATATAATTTAGCCATACGACTGAACTGTAAGATCCCATTATTGTATTTGAA
TCGGGCTGCTTGCCACCTCAAATTAAAAAACCTACACAAGGCCATCGAGGACTCTTCTAAGGCACTAGAG
TTATTGACACCACCTGTTGCTGACAATGCCAATGCAAGAATGAAGGCACACGTCCGACGAGGGACAGCGT
TCTGTCAACTAGAATTGTATGTTGAAGGCTTGCAAGATTATGAAGCTGCACTTAAGATTGACCCAGCCAA
CACAGTTGTACAGAACGATGCAGAGAAGATTCGGAATATAATTCAAGGGACGGCACTGAAGTCTCGTGAC
TAG

Translation (420 aa):
MPVRVSEFSWQQTPATIFLSLPLRGVCVRDADVFCGESYLKVNFPPFLFELFLYAPIDDGKSKAKIGNDT
ILFTLYKKEPVLWDSLSVPGVDKEMMQRIREKSILQAQEKAKEATEAKAVAKREDQRYALGEMMKIEEEE
RKKIEDMKENERKKATSELEAWKECQKKADGQKRVQRKEKPLEGKQAEETKALKPRGLPRKAPPTRLPTR
GRNWENIFPEKLKEDRVPAPRSAGSIQISFTPRVFPTALRESQVAEEEEWLHKQAEARRAMSTDLPEFFD
LKEEERNPDWLKDKGNKLFATENYLAAVDAYNLAIRLNCKIPLLYLNRAACHLKLKNLHKAIEDSSKALE
LLTPPVADNANARMKAHVRRGTAFCQLELYVEGLQDYEAALKIDPANTVVQNDAEKIRNIIQGTALKSRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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